Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11520 | Canola | cytosol | 96.84 | 96.84 |
| CDX76751 | Canola | cytosol | 92.63 | 89.34 |
| Bra034259.1-P | Field mustard | cytosol | 41.05 | 39.39 |
| AT2G25565.1 | Thale cress | cytosol | 34.21 | 31.55 |
| Bra022125.1-P | Field mustard | cytosol | 27.89 | 27.04 |
Protein Annotations
| EnsemblPlants:Bra007789.1 | EnsemblPlants:Bra007789.1-P | EnsemblPlantsGene:Bra007789 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF430 | PFAM:PF13639 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002542C94 | UniProt:M4CU95 | MapMan:35.2 |
Description
AT2G25565 (E=1e-022) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G24480.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA09:+:30878909..30879481
Molecular Weight (calculated)
22235.3 Da
IEP (calculated)
5.783
GRAVY (calculated)
-0.308
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIIAFTSFD QTFYHHPSRK NKVCISFYQR FQRFAVDDTD GTLVCTGLDP PFHFPSRQIN LNLISHQLSP RHLFRLVDSR LHDRTLSRRI AEKIAAEAVQ
101: YVGFLQPYVM SVYVVKIQQV VSLREKEEEE ESTSCAICLE GLYKNDETFD LPYCSHRFHS TCVGEWLQSH NSCPLCREIL LEEYVETDFD
101: YVGFLQPYVM SVYVVKIQQV VSLREKEEEE ESTSCAICLE GLYKNDETFD LPYCSHRFHS TCVGEWLQSH NSCPLCREIL LEEYVETDFD
001: METGDMKFAI TTKIFSQTTY LPLSLNNTVC IINLRQQFKR YVIDKSNGSI TFNGLYPGPP LPISQIRLNL LNYKFTPFHL FPLLDSRLHD PSLSKYIAEV
101: ITGQASLSVG FLQRLFMFVN VVLTQEVFSV IPVSCLPKEE TQEVEDESTC PICLENFLND YVNDEVFSVI PKCAVENLWN DNDKNQITTN CHIVCIGFIK
201: DISSSG
101: ITGQASLSVG FLQRLFMFVN VVLTQEVFSV IPVSCLPKEE TQEVEDESTC PICLENFLND YVNDEVFSVI PKCAVENLWN DNDKNQITTN CHIVCIGFIK
201: DISSSG
Arabidopsis Description
C3HC4-type RING finger protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.