CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007789.1-P	Field mustard	nucleus	89.34	92.63
CDY11520	Canola	cytosol	89.34	92.63
CDY35352	Canola	cytosol	38.58	38.38
CDY69272	Canola	cytosol	36.04	35.86
AT2G25565.1	Thale cress	cytosol	30.96	29.61
CDY51685	Canola	cytosol	28.93	29.08
CDY28939	Canola	cytosol	27.41	27.55

Protein Annotations

EnsemblPlants:CDX76751	EnsemblPlantsGene:GSBRNA2T00127242001	Gene3D:3.30.40.10	GO:A0A078CHP1	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR22765	PFAM:PF13639	PFscan:PS50089
ProteinID:CDX76751	ProteinID:CDX76751.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EE1C60
MapMan:35.2	:	:	:	:	:

Description

BnaC08g33370D

Coordinates

chrLK031808:+:834371..835879

Molecular Weight (calculated)

23199.4 Da

IEP (calculated)

4.851

GRAVY (calculated)

-0.386

Length

197 amino acids

Sequence
(BLAST)

001: MDIIALTSFD QTFYHQHSRK NRVCISFYQR FQRFAVDDTD GTLVCTGLDP PFHFPSRQIN LNLISHQLSP RYLFRLVDSR LHDRTLSRRI AEKIAAEAVQ
101: YVGFLQPYVM SVYVVKTQQM VTLREEEEEE ETQKEEEEST TCAICLEGLC KNDETFDLLY CSHRFHSTCV GEWLQSHNSC PLCREVLLEE YVETDFY

Best Arabidopsis Sequence Match ( AT2G25565.1 )
(BLAST)

001: METGDMKFAI TTKIFSQTTY LPLSLNNTVC IINLRQQFKR YVIDKSNGSI TFNGLYPGPP LPISQIRLNL LNYKFTPFHL FPLLDSRLHD PSLSKYIAEV
101: ITGQASLSVG FLQRLFMFVN VVLTQEVFSV IPVSCLPKEE TQEVEDESTC PICLENFLND YVNDEVFSVI PKCAVENLWN DNDKNQITTN CHIVCIGFIK
201: DISSSG

Arabidopsis Description

C3HC4-type RING finger protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.