CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007789.1-P	Field mustard	nucleus	96.84	96.84
CDX76751	Canola	cytosol	92.63	89.34
CDY35352	Canola	cytosol	41.05	39.39
CDY69272	Canola	cytosol	38.42	36.87
AT2G25565.1	Thale cress	cytosol	35.79	33.01
CDY51685	Canola	cytosol	29.47	28.57
CDY28939	Canola	cytosol	27.89	27.04

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:A0A078FAY3	UniProt:A0A078FAY3	EnsemblPlants:CDY11520	ProteinID:CDY11520
ProteinID:CDY11520.1	EnsemblPlantsGene:GSBRNA2T00049601001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639	PFscan:PS50089
PANTHER:PTHR14155	PANTHER:PTHR14155:SF430	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EF1F7B	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

BnaA09g40860DBnaA09g40860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAY3]

Coordinates

chrLK032011:+:781394..781966

Molecular Weight (calculated)

22224.3 Da

IEP (calculated)

5.515

GRAVY (calculated)

-0.316

Length

190 amino acids

Sequence
(BLAST)

001: MDIIAFTSFD QTFYHHPSRK NRVCISFYQR FQRFAIDDTD GTLVCTGLDP PFHFPSRQIN LNLISHQLSP RHLFRLIDSR LHDRTLSRRI AEKIAAEAVQ
101: YVGFLQPYVM SVYVVKTQQV VSLSEKEEEE ESTTCAICLE GLYKNDETFD LPYCSHRFHS TCVGEWLQSH NSCPLCREIL LEEYVETDFD

Best Arabidopsis Sequence Match ( AT2G25565.1 )
(BLAST)

001: METGDMKFAI TTKIFSQTTY LPLSLNNTVC IINLRQQFKR YVIDKSNGSI TFNGLYPGPP LPISQIRLNL LNYKFTPFHL FPLLDSRLHD PSLSKYIAEV
101: ITGQASLSVG FLQRLFMFVN VVLTQEVFSV IPVSCLPKEE TQEVEDESTC PICLENFLND YVNDEVFSVI PKCAVENLWN DNDKNQITTN CHIVCIGFIK
201: DISSSG

Arabidopsis Description

C3HC4-type RING finger protein [Source:UniProtKB/TrEMBL;Acc:Q8RUZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.