Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28939 | Canola | cytosol | 95.41 | 95.41 |
| Bra022125.1-P | Field mustard | cytosol | 94.9 | 94.9 |
| AT1G70910.1 | Thale cress | cytosol | 38.27 | 46.58 |
| AT1G57730.1 | Thale cress | cytosol | 34.18 | 38.51 |
| CDY11520 | Canola | cytosol | 28.57 | 29.47 |
| CDY35352 | Canola | cytosol | 29.59 | 29.29 |
| CDX76751 | Canola | cytosol | 29.08 | 28.93 |
| CDY69272 | Canola | cytosol | 28.06 | 27.78 |
Protein Annotations
| EnsemblPlants:CDY51685 | EnsemblPlantsGene:GSBRNA2T00004021001 | Gene3D:3.30.40.10 | GO:A0A078IKV2 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF418 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY51685 | ProteinID:CDY51685.1 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EE4084 | UniProt:A0A078IKV2 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC02g46940DBnaC02g46940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKV2]
Coordinates
chrLK033018:+:56912..57502
Molecular Weight (calculated)
22114.5 Da
IEP (calculated)
4.602
GRAVY (calculated)
-0.153
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MFERGANCSL IMLESGEQAT IDIEATVSCK CSSNTLKIRL KRDTEVFLVH QRDGSVDIIG SQPAPPFPIP HILLKDIGSF DPHNINPLLQ LDPVLCDHIS
101: VIIASKAAEE RVPGPLYISL YVTVTPHRFL GDDIPFPEQD EELETCGICL EELNPRGEIY FDMPNCSHQF HDLCISRWLR RSKTCPLCRT FADYDD
101: VIIASKAAEE RVPGPLYISL YVTVTPHRFL GDDIPFPEQD EELETCGICL EELNPRGEIY FDMPNCSHQF HDLCISRWLR RSKTCPLCRT FADYDD
001: MSEIEELVCI EASVTRKSTS NTVEIRESRR NKVTLGSSDS PAFPTPHLFL KNIVSFDEQS MYNLLYPRLQ DPNLCSILSF KIAFEAKRVP GPLYISYDVT
101: LTPQIFEEPD METCGLCLLE EQHLFDMPNC AHVFHGDCID KWLSTSNNCP LCGVEIMDDD E
101: LTPQIFEEPD METCGLCLLE EQHLFDMPNC AHVFHGDCID KWLSTSNNCP LCGVEIMDDD E
Arabidopsis Description
DEPAt1g70910 [Source:UniProtKB/TrEMBL;Acc:Q3ECE3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.