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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra022125.1-P Field mustard cytosol 39.08 34.69
CDY51685 Canola cytosol 38.51 34.18
AT1G70910.1 Thale cress cytosol 31.61 34.16
CDY28939 Canola cytosol 37.93 33.67
AT2G25565.1 Thale cress cytosol 18.39 15.53
Protein Annotations
Gene3D:3.30.40.10MapMan:35.2EntrezGene:842148UniProt:A0A178W967ProteinID:AAG50733.1ProteinID:AEE33457.1
ArrayExpress:AT1G57730EnsemblPlantsGene:AT1G57730RefSeq:AT1G57730TAIR:AT1G57730RefSeq:AT1G57730-TAIR-GEnsemblPlants:AT1G57730.1
TAIR:AT1G57730.1GO:GO:0003674GO:GO:0003824GO:GO:0006464GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538GO:GO:0043161
GO:GO:0061630InterPro:IPR001841InterPro:IPR013083RefSeq:NP_176085.1ProteinID:OAP14311.1PFAM:PF13639
PFscan:PS50089PANTHER:PTHR14155PANTHER:PTHR14155:SF418UniProt:Q9FVT1SMART:SM00184SUPFAM:SSF57850
UniParc:UPI00000A9224InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDSEG:seg::
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FVT1]
Coordinates
chr1:-:21380765..21381461
Molecular Weight (calculated)
19865.3 Da
IEP (calculated)
4.196
GRAVY (calculated)
-0.352
Length
174 amino acids
Sequence
(BLAST)
001: MVPEITIDVN VFPSPRKSSS NTVEINLKRE SDDKCDDAPL FQITQLILKD VVNFDPHKTS PLLETIFPDS ISGTRLCVEM ALASERVPAP FDMYLHVTVR
101: FVEESTSSSP LENKTCAICL EDMSQDVHDY QEMPNCPHVF HNDCIYKWLG HSNLCPLCRT VLEDEDDDDY PYYS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.