Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra022125.1-P | Field mustard | cytosol | 39.08 | 34.69 |
CDY51685 | Canola | cytosol | 38.51 | 34.18 |
AT1G70910.1 | Thale cress | cytosol | 31.61 | 34.16 |
CDY28939 | Canola | cytosol | 37.93 | 33.67 |
AT2G25565.1 | Thale cress | cytosol | 18.39 | 15.53 |
Protein Annotations
Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:842148 | UniProt:A0A178W967 | ProteinID:AAG50733.1 | ProteinID:AEE33457.1 |
ArrayExpress:AT1G57730 | EnsemblPlantsGene:AT1G57730 | RefSeq:AT1G57730 | TAIR:AT1G57730 | RefSeq:AT1G57730-TAIR-G | EnsemblPlants:AT1G57730.1 |
TAIR:AT1G57730.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 |
GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_176085.1 | ProteinID:OAP14311.1 | PFAM:PF13639 |
PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF418 | UniProt:Q9FVT1 | SMART:SM00184 | SUPFAM:SSF57850 |
UniParc:UPI00000A9224 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FVT1]
Coordinates
chr1:-:21380765..21381461
Molecular Weight (calculated)
19865.3 Da
IEP (calculated)
4.196
GRAVY (calculated)
-0.352
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPEITIDVN VFPSPRKSSS NTVEINLKRE SDDKCDDAPL FQITQLILKD VVNFDPHKTS PLLETIFPDS ISGTRLCVEM ALASERVPAP FDMYLHVTVR
101: FVEESTSSSP LENKTCAICL EDMSQDVHDY QEMPNCPHVF HNDCIYKWLG HSNLCPLCRT VLEDEDDDDY PYYS
101: FVEESTSSSP LENKTCAICL EDMSQDVHDY QEMPNCPHVF HNDCIYKWLG HSNLCPLCRT VLEDEDDDDY PYYS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.