CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013918.1-P	Field mustard	plastid	95.6	96.07
CDY68099	Canola	plastid	95.11	96.05
AT4G25770.2	Thale cress	plastid	81.66	79.15
PGSC0003DMT400070685	Potato	cytosol	10.76	72.13
KRH62985	Soybean	plastid	59.66	58.23
KRH54906	Soybean	plastid	59.9	58.19
VIT_11s0052g01660.t01	Wine grape	plastid	54.03	54.84
Solyc07g006690.2.1	Tomato	plastid	55.5	51.59
CDY05841	Canola	cytosol	42.3	51.03
CDX71694	Canola	cytosol	42.79	49.58
CDY20663	Canola	nucleus	44.99	48.17
CDY31052	Canola	nucleus	44.01	48.13
CDY15650	Canola	cytosol	28.36	44.62
CDX81158	Canola	cytosol	16.63	36.17
CDX90168	Canola	plastid	37.16	34.16
CDY43318	Canola	plastid	37.16	34.08
CDX98042	Canola	cytosol	11.0	15.2

Protein Annotations

EnsemblPlants:CDX94416	EnsemblPlantsGene:GSBRNA2T00157558001	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:DUF676_lipase-like	InterPro:IPR029058
ncoils:Coil	PANTHER:PTHR12482	PANTHER:PTHR12482:SF21	PFAM:PF05057	ProteinID:CDX94416	ProteinID:CDX94416.1
SUPFAM:SSF53474	UniParc:UPI0004EEE02A	MapMan:35.2	:	:	:

Description

BnaC01g17680D

Coordinates

chrLK031881:+:1043362..1045820

Molecular Weight (calculated)

45807.0 Da

IEP (calculated)

8.828

GRAVY (calculated)

-0.284

Length

409 amino acids

Sequence
(BLAST)

001: MIASFSFSTL QISIPDSIPS APRFLPLGQH QLRFRFRARP KNLDHMELMK RLGIGCFAAK HSTREMKTEK DSGGEDLFIE SAAKPDHLVV MVNGIIGSSA
101: DWKYAAEQFV KKFPDKVLVH RDESNSATLT FDGVDMMGER LANEVLSVIK NRTGLKKISF VAHSLGGLVA RYAVGKLYEK PGEANSLESP SKAKSGEIAG
201: LEPMNFITFA TPHLGSRGHR QFPILCGLPF LERTASQTAH LAAGRTGKHL FLVDNDDGNL PLLIRMATDS FNFKFISALN AFKRRVAYAN VNFDYMVGWR
301: TSSIRRPNEL PKPNLLATDP NYPHIVYVEH GNVDNGSCKS TSAVVKDENT DLEEEMLHGL GQLLWERVDV SFHNSKQRYV AHNTIQVKTY WLHSDGKDVV
401: FHMMDHFCL

Best Arabidopsis Sequence Match ( AT4G25770.1 )
(BLAST)

001: MIASFSRFQI SIPDLIPSSP RFLPPSQNQF RFRLYLQFPA QPKNLCQMEW MNRLGIGCFA ANRSKRELTT EIDNGGEDFF DADVMESAEK PDHLVVMVNG
101: IVGSAADWKY AAEQFVKKFP DKVLVHRSES NSATLTFDGV DKMGERLANE VLGVVKHRSG LKKISFVAHS LGGLVARYAI GKLYEQPGEV DSLDSPSKEK
201: SARGGEIAGL EPMNFITFAT PHLGSRGHRQ FPILCGLPFL ERTASQTAHL AAGRTGKHLF LVDNDDGNAP LLIRMATDSD DLKFISALNA FKRRVAYANV
301: NFDSMVGWRT SSIRRPNELP KPNLLATDPN YPHIVYVERG NVDNGSCQST STVVTEQDTD LEEEMIHGLS QLSWERVDVS FHNSKQRYVA HSTIQVKTYW
401: LHSDGKDVVF HMMDHFGL

Arabidopsis Description

alpha/beta-Hydrolases superfamily protein [Source:TAIR;Acc:AT4G25770]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.