CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31052	Canola	nucleus	47.87	24.06
CDY20663	Canola	nucleus	47.34	23.3
CDY15650	Canola	cytosol	28.19	20.38
CDY05841	Canola	cytosol	34.57	19.17
CDX71694	Canola	cytosol	34.04	18.13
CDY68099	Canola	plastid	37.23	17.28
CDX94416	Canola	plastid	36.17	16.63
Zm00001d018325_P001	Maize	plastid	36.7	15.2
Os02t0787100-01	Rice	plastid	36.17	14.69
KXG31240	Sorghum	plastid	35.11	14.57
CDX90168	Canola	plastid	33.51	14.16
CDY43318	Canola	plastid	33.51	14.13
TraesCS6A01G346200.1	Wheat	plastid	33.51	13.82
TraesCS6D01G329100.1	Wheat	plastid	33.51	13.82
TraesCS6B01G379700.1	Wheat	plastid	32.98	13.6
CDX98042	Canola	cytosol	14.36	9.12

Protein Annotations

EnsemblPlants:CDX81158	EnsemblPlantsGene:GSBRNA2T00134611001	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:DUF676_lipase-like	InterPro:IPR029058
PANTHER:PTHR12482	PANTHER:PTHR12482:SF21	PFAM:PF05057	ProteinID:CDX81158	ProteinID:CDX81158.1	SUPFAM:SSF53474
UniParc:UPI0004EE953F	MapMan:35.2	:	:	:	:

Description

BnaC03g04120D

Coordinates

chrLK031823:-:1977825..1978923

Molecular Weight (calculated)

21160.0 Da

IEP (calculated)

10.139

GRAVY (calculated)

-0.277

Length

188 amino acids

Sequence
(BLAST)

001: MGQRLAEDVR ALIKRHPSLQ KISFVGHSLG GLITRYVVAC LYEQESPQNS EKSKERIGGL EPVCFITSAT PHLGSRGHKQ VPLMAGVMTD ELRSFLELNL
101: PKVKEGKKPK FSLGTSAPKL GSHILEATKI PCQINKFVLV LLCGMRLHFD RFIKDLKVSL IEGRVGVHHL DDSQQNKNFT FKCQQRWE

Best Arabidopsis Sequence Match ( AT1G10040.2 )
(BLAST)

001: MEEEDSVIPK NTEGDGRVGS DLEGIRKPKK MKKMRSRKSD DKETKKKKKK YWMGCLRAES DESGNVDLTV DFPGERTEPT HLVVMVNGLI GSAQNWRFAA
101: KQMLKKYPQD LLVHCSKRNH STQTFDGVDV MGERLAEEVR SVIKRHPSLQ KISFVGHSLG GLIARYAIGR LYEQESREEL PHNSDDIGDK CSIEEPKARI
201: AGLEPVYFIT SATPHLGSRG HKQVPLFSGS YTLERLATRM SGCLGKTGKH LFLADSDGGK PPLLLRMVKD SRDLKFISAL QCFKRRIAYA NTSFDHLVGW
301: STSSIRRHNE LPKLQRGPVN EKYPHIVNVE APDTASNYEE DHSRTKADRF KNLDMEEEMI RELTKLSWER VDVSFRGTLQ RFLAHNTIQA SENKDDQFSW
401: SRCYTTHD

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q08A69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.