CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037373.1-P	Field mustard	cytosol	91.55	88.27
CDX81158	Canola	cytosol	9.12	14.36
GSMUA_Achr9P13600_001	Banana	cytosol	15.88	14.2
PGSC0003DMT400026438	Potato	cytosol	8.11	13.79
CDY05841	Canola	cytosol	14.53	12.68
GSMUA_Achr5P04770_001	Banana	cytosol	14.53	12.5
CDY20663	Canola	nucleus	15.88	12.3
CDY31052	Canola	nucleus	15.54	12.3
CDX71694	Canola	cytosol	14.53	12.18
Os08t0447300-00	Rice	plasma membrane	16.89	11.88
KXG25255	Sorghum	plastid	16.89	11.76
CDY68099	Canola	plastid	15.54	11.36
CDX90168	Canola	plastid	16.55	11.01
CDX94416	Canola	plastid	15.2	11.0
CDY43318	Canola	plastid	16.55	10.99
HORVU7Hr1G060790.8	Barley	plastid	15.88	10.88
TraesCS7B01G177600.2	Wheat	plastid	15.88	10.88
TraesCS7D01G281400.3	Wheat	plastid	15.88	10.88
TraesCS7A01G282700.3	Wheat	plastid	15.54	10.65
CDY15650	Canola	cytosol	8.45	9.62
Zm00001d032111_P003	Maize	plastid	15.54	8.86

Protein Annotations

EnsemblPlants:CDX98042

EnsemblPlantsGene:GSBRNA2T00105412001

ProteinID:CDX98042

ProteinID:CDX98042.1

UniParc:UPI0004EE0393

MapMan:35.2

Description

BnaA06g07930D

Coordinates

chrLK031902:+:662223..664227

Molecular Weight (calculated)

32841.3 Da

IEP (calculated)

6.414

GRAVY (calculated)

-0.210

Length

296 amino acids

Sequence
(BLAST)

001: MTAELRSFLE LNLPKVKEGK KPKFSLGTSE PKLGSHILEA TKITCQSNEF VLELLRVFSL TSSKDKGAES DADLVIIKSI CCPLQMMMLR NGFVMGRTTD
101: SVDHFHNLRL DVDSMSYEGE LVSIIWMILN RTRTSHSNVN RDGNEIYSVN ALNFHPDFDE AILYQRKNLI SANQGRRCPK LTGVGASTVF TRYCWEYFNL
201: PIEPIPLQLD CKASELHCFP HLGTDQRPPQ SNLEVLVKLC TNFSPVQLYD VGAGAVKKSN VSGVKITYVD HGTCVDDEAV EGGLADATAP GHNSVN

Best Arabidopsis Sequence Match ( AT1G56110.1 )
(BLAST)

001: MAMYVIYESS SGYGLFEVHG LDEIGQNTEA VRTSVSDLSR FGRVVQLTAF HPFESALDAL NQVNAVSEGV MTDELRSFLE LNLPKVKEGK KPKFSLGLAE
101: PKLGSHIFEA TKIPCQSNEF VLELLRGVRQ HFDRFIKDLK PGDLEKSQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYARVSKMI DDKSKLTEDH IPMLTEVLGD EDKAKEVIEA GKASMGSDLS PLDLINVQTF AQKVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARYLANKCS IASRIDCFAD GATTAFGEKL
401: REQVEERLEF YDKGVAPRKN VDVMKEVIEN LKQEEEGKEP VDASVKKSKK KKAKGEEEEE VVAMEEDKSE KKKKKEKRKM ETAEENEKSE KKKTKKSKAG
501: GEEETDDGHS TKKKKKKSKS AE

Arabidopsis Description

NOP56At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.