Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98042 | Canola | cytosol | 88.27 | 91.55 |
| GSMUA_Achr9P13600_001 | Banana | cytosol | 15.64 | 14.5 |
| PGSC0003DMT400026438 | Potato | cytosol | 8.14 | 14.37 |
| Bra035731.1-P | Field mustard | cytosol | 14.98 | 13.45 |
| GSMUA_Achr5P04770_001 | Banana | cytosol | 14.01 | 12.5 |
| Os08t0447300-00 | Rice | plasma membrane | 16.29 | 11.88 |
| KXG25255 | Sorghum | plastid | 16.29 | 11.76 |
| Bra013918.1-P | Field mustard | plastid | 14.98 | 11.3 |
| HORVU7Hr1G060790.8 | Barley | plastid | 15.31 | 10.88 |
| TraesCS7B01G177600.2 | Wheat | plastid | 15.31 | 10.88 |
| TraesCS7D01G281400.3 | Wheat | plastid | 15.31 | 10.88 |
| Bra010851.1-P | Field mustard | plastid | 15.64 | 10.79 |
| TraesCS7A01G282700.3 | Wheat | plastid | 14.98 | 10.65 |
| Bra018465.1-P | Field mustard | nucleus | 12.7 | 10.51 |
| Zm00001d032111_P003 | Maize | plastid | 14.98 | 8.86 |
Protein Annotations
Description
AT1G56110 (E=2e-022) NOP56 | NOP56 (Arabidopsis homolog of nucleolar protein Nop56)
Coordinates
chrA09:+:828551..830350
Molecular Weight (calculated)
33992.3 Da
IEP (calculated)
6.239
GRAVY (calculated)
-0.323
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAELRSFLE LNLPKVKEGK KPKFSLGTSE PKLGSHMLEA TKIPCRSNEF VLELLRAWGS GKVFSLTSSK DKGAESDSLT SSKDKGTESD AEFFSQMMML
101: RNGFVMGRTT DSLDHFHNLR LDVDSMSYEG ELVSIIWIIL NRTRTSHSNV NRDGNEVYSV NALNFHPDFD EAILYQRTNL ISATQGRRCP KLTGVGASTV
201: FTRYCWEYFN LPIEPIPLQL DCKASELHCF PHLGTDQRPP QSNLEVLVKF CTNFSPVQLY DVGAEAVKKS NVSGVKITFV DHGTCVGDEA VEGGLADATA
301: PGHNSVN
101: RNGFVMGRTT DSLDHFHNLR LDVDSMSYEG ELVSIIWIIL NRTRTSHSNV NRDGNEVYSV NALNFHPDFD EAILYQRTNL ISATQGRRCP KLTGVGASTV
201: FTRYCWEYFN LPIEPIPLQL DCKASELHCF PHLGTDQRPP QSNLEVLVKF CTNFSPVQLY DVGAEAVKKS NVSGVKITFV DHGTCVGDEA VEGGLADATA
301: PGHNSVN
001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEVGS AFLTKY
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEVGS AFLTKY
Arabidopsis Description
Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.