Factsheet for VIT_11s0037g00420.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026283.1-P	Field mustard	endoplasmic reticulum, extracellular	75.0	70.13
VIT_13s0019g03650.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	51.39	68.52
AT4G28088.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	72.22	67.53
VIT_08s0040g02660.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	51.39	67.27
CDY20271	Canola	endoplasmic reticulum, extracellular, plasma membrane	68.06	65.33
AT2G24040.1	Thale cress	plasma membrane	68.06	65.33
Solyc07g005730.2.1	Tomato	endoplasmic reticulum, extracellular	63.89	64.79
GSMUA_Achr7P19400_001	Banana	extracellular, golgi, vacuole	59.72	64.18
Bra032129.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	66.67	64.0
CDY39689	Canola	endoplasmic reticulum, extracellular, plasma membrane	66.67	64.0
PGSC0003DMT400028949	Potato	endoplasmic reticulum, extracellular	62.5	63.38
Solyc07g005720.2.1	Tomato	endoplasmic reticulum, plasma membrane	58.33	59.15
GSMUA_Achr7P16140_001	Banana	endoplasmic reticulum, extracellular, golgi	52.78	55.07
Os06t0184800-01	Rice	plasma membrane	56.94	53.95
TraesCS7D01G150900.1	Wheat	extracellular, golgi, vacuole	56.94	53.95
TraesCS7A01G149300.1	Wheat	extracellular, golgi, plasma membrane	55.56	52.63
Zm00001d045096_P001	Maize	endoplasmic reticulum, extracellular, golgi	51.39	49.33
EER89340	Sorghum	extracellular, golgi	51.39	48.68
VIT_14s0060g00280.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	41.67	47.62
KRH72320	Soybean	plasma membrane	52.78	34.23
TraesCS7B01G053000.1	Wheat	cytosol, nucleus, plasma membrane	55.56	20.94

Protein Annotations

EntrezGene:100244900	wikigene:100244900	MapMan:35.1	UniProt:A5AXQ2	EMBL:AM439423	EMBL:AM479838
ProteinID:CAN64139	ProteinID:CAN64139.1	ProteinID:CAN73911	ProteinID:CAN73911.1	ProteinID:CBI36543	ProteinID:CBI36543.3
EMBL:FN596499	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100244900	wikigene:LOC100244900
PFAM:PF01679	InterPro:PMP3	ScanProsite:PS01309	PANTHER:PTHR21659	PANTHER:PTHR21659:SF34	SignalP:SignalP-TM
TIGR:TC65357	TMHMM:TMhelix	UniParc:UPI000151FB35	ArrayExpress:VIT_11s0037g00420	EnsemblPlantsGene:VIT_11s0037g00420	EnsemblPlants:VIT_11s0037g00420.t01
RefSeq:XP_002277561	RefSeq:XP_002277561.1	:	:	:	:

Description

No Description!

Coordinates

chr11:+:8219091..8219617

Molecular Weight (calculated)

8218.3 Da

IEP (calculated)

4.426

GRAVY (calculated)

1.015

Length

72 amino acids

Sequence
(BLAST)

1: MATRCEIFCE ILIAILLPPV GVCFRHGCCS VEFCICLLLT LLGYIPGIIY ALYVIVFVDR DPDDYYWRPL NA

Best Arabidopsis Sequence Match ( AT4G30650.1 )
(BLAST)

1: MASNMEVFCE ILIAILLPPL GVCLKRGCCT VEFLICLVLT ILGYIPGIIY ALYVIVFQNR EGSTELGAPL NSA

Arabidopsis Description

UPF0057 membrane protein At4g30650 [Source:UniProtKB/Swiss-Prot;Acc:Q9M095]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.