Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 6
- nucleus 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G150900.1 | Wheat | extracellular, golgi, vacuole | 88.16 | 88.16 |
| TraesCS7A01G149300.1 | Wheat | extracellular, golgi, plasma membrane | 85.53 | 85.53 |
| Zm00001d045096_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 80.26 | 81.33 |
| EER89340 | Sorghum | extracellular, golgi | 78.95 | 78.95 |
| Os05t0122700-01 | Rice | endoplasmic reticulum, plasma membrane | 50.0 | 70.37 |
| GSMUA_Achr7P19400_001 | Banana | extracellular, golgi, vacuole | 57.89 | 65.67 |
| Os03t0286900-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 43.42 | 61.11 |
| Os09t0558100-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 56.58 | 59.72 |
| CDY20271 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 56.58 | 57.33 |
| Bra026283.1-P | Field mustard | endoplasmic reticulum, extracellular | 57.89 | 57.14 |
| VIT_11s0037g00420.t01 | Wine grape | extracellular | 53.95 | 56.94 |
| AT4G30660.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 55.26 | 56.76 |
| AT2G24040.1 | Thale cress | plasma membrane | 55.26 | 56.0 |
| Bra032129.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 55.26 | 56.0 |
| CDY39689 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 55.26 | 56.0 |
| AT4G28088.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 56.58 | 55.84 |
| Solyc07g005730.2.1 | Tomato | endoplasmic reticulum, extracellular | 51.32 | 54.93 |
| CDY39234 | Canola | endoplasmic reticulum, plasma membrane | 53.95 | 54.67 |
| Bra024053.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 53.95 | 54.67 |
| CDX72260 | Canola | endoplasmic reticulum, plasma membrane | 53.95 | 54.67 |
| Os07t0635900-01 | Rice | endoplasmic reticulum, plasma membrane | 39.47 | 53.57 |
| PGSC0003DMT400028949 | Potato | endoplasmic reticulum, extracellular | 50.0 | 53.52 |
| CDY28201 | Canola | extracellular | 52.63 | 53.33 |
| Bra011209.1-P | Field mustard | extracellular | 52.63 | 53.33 |
| CDX68683 | Canola | extracellular | 52.63 | 53.33 |
| CDY28200 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 51.32 | 52.7 |
| Bra011208.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 51.32 | 52.7 |
| CDX68682 | Canola | endoplasmic reticulum, plasma membrane | 51.32 | 52.7 |
| AT4G30650.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 50.0 | 52.05 |
| Solyc07g005720.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 47.37 | 50.7 |
| CDX73908 | Canola | endoplasmic reticulum, extracellular, vacuole | 50.0 | 50.67 |
| CDX81520 | Canola | endoplasmic reticulum, extracellular, vacuole | 48.68 | 49.33 |
| CDX87926 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 47.37 | 48.0 |
| Os03t0370600-00 | Rice | golgi, plasma membrane, vacuole | 39.47 | 46.88 |
| Os06t0651900-01 | Rice | extracellular, golgi, plasma membrane | 36.84 | 35.9 |
| TraesCS7B01G053000.1 | Wheat | cytosol, nucleus, plasma membrane | 86.84 | 34.55 |
| KRH72320 | Soybean | plasma membrane | 40.79 | 27.93 |
| CDX77737 | Canola | plasma membrane | 44.74 | 20.0 |
Protein Annotations
| EnsemblPlants:Os06t0184800-01 | EnsemblPlantsGene:Os06g0184800 | EntrezGene:4340332 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:PMP3 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF33 | PFAM:PF01679 | ProteinID:BAD72523.1 | ProteinID:BAF18911.1 |
| ProteinID:BAS96503.1 | ProteinID:EEE65223.1 | RefSeq:XP_015643303.1 | ScanProsite:PS01309 | SEG:seg | SignalP:SignalP-TM |
| TMHMM:TMhelix | UniParc:UPI000046D511 | UniProt:Q5SMN0 | MapMan:35.2 | : | : |
Description
rare cold-inducible 2-8Similar to Low-temperature induced protein lt101.1 (Blt101) (Blt101.1). (Os06t0184800-01)
Coordinates
chr6:-:4264424..4265115
Molecular Weight (calculated)
8638.9 Da
IEP (calculated)
5.726
GRAVY (calculated)
0.730
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MGCCCRCLEI LCAILLPPLG VCLRHGCCTM EFWISVLLTI LGYLPGVLYA VYVIVSVDPD RERRRRVDPD EYIYVA
1: MANGCEICCE IMIAILIPPL GVCLRHGCCT TEFMICLILT LLGYVPGIIY ALYAIVYVDR DQFFDEYRRP LFYAQSP
Arabidopsis Description
Low temperature and salt responsive protein family [Source:UniProtKB/TrEMBL;Acc:F4JKH9]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.