Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- vacuole 5
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026283.1-P | Field mustard | endoplasmic reticulum, extracellular | 96.1 | 96.1 |
| VIT_11s0037g00420.t01 | Wine grape | extracellular | 67.53 | 72.22 |
| AT2G24040.1 | Thale cress | plasma membrane | 70.13 | 72.0 |
| AT4G30660.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 66.23 | 68.92 |
| Solyc07g005730.2.1 | Tomato | endoplasmic reticulum, extracellular | 58.44 | 63.38 |
| PGSC0003DMT400028949 | Potato | endoplasmic reticulum, extracellular | 58.44 | 63.38 |
| AT4G30650.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 59.74 | 63.01 |
| AT2G38905.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 44.16 | 62.96 |
| AT3G05880.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 42.86 | 61.11 |
| Solyc07g005720.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 55.84 | 60.56 |
| AT3G05890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 41.56 | 59.26 |
| GSMUA_Achr7P19400_001 | Banana | extracellular, golgi, vacuole | 49.35 | 56.72 |
| Os06t0184800-01 | Rice | plasma membrane | 55.84 | 56.58 |
| TraesCS7A01G149300.1 | Wheat | extracellular, golgi, plasma membrane | 53.25 | 53.95 |
| TraesCS7D01G150900.1 | Wheat | extracellular, golgi, vacuole | 51.95 | 52.63 |
| GSMUA_Achr7P16140_001 | Banana | endoplasmic reticulum, extracellular, golgi | 45.45 | 50.72 |
| AT1G57550.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 32.47 | 48.08 |
| Zm00001d045096_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 46.75 | 48.0 |
| EER89340 | Sorghum | extracellular, golgi | 46.75 | 47.37 |
| KRH72320 | Soybean | plasma membrane | 48.05 | 33.33 |
| TraesCS7B01G053000.1 | Wheat | cytosol, nucleus, plasma membrane | 53.25 | 21.47 |
Protein Annotations
| EntrezGene:2745729 | MapMan:35.1 | UniProt:A0A178UWL7 | ProteinID:AEE85439.1 | ArrayExpress:AT4G28088 | EnsemblPlantsGene:AT4G28088 |
| RefSeq:AT4G28088 | TAIR:AT4G28088 | RefSeq:AT4G28088-TAIR-G | EnsemblPlants:AT4G28088.1 | TAIR:AT4G28088.1 | UniProt:F4JKH9 |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_974629.1 | ProteinID:OAO98278.1 |
| PFAM:PF01679 | InterPro:PMP3 | PO:PO:0000293 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF34 | TMHMM:TMhelix |
| UniParc:UPI000034F1C4 | : | : | : | : | : |
Description
Low temperature and salt responsive protein family [Source:UniProtKB/TrEMBL;Acc:F4JKH9]
Coordinates
chr4:-:13961134..13961611
Molecular Weight (calculated)
8759.0 Da
IEP (calculated)
4.453
GRAVY (calculated)
0.812
Length
77 amino acids
Sequence
(BLAST)
(BLAST)
1: MANGCEICCE IMIAILIPPL GVCLRHGCCT TEFMICLILT LLGYVPGIIY ALYAIVYVDR DQFFDEYRRP LFYAQSP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.