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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 6
  • golgi 5
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:cytosol, nucleus, secretory
BaCelLo:secretory
EpiLoc:nucleus
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT4G28088.1 Thale cress endoplasmic reticulum, extracellular, vacuole 96.1 96.1
VIT_11s0037g00420.t01 Wine grape extracellular 70.13 75.0
Bra024053.1-P Field mustard endoplasmic reticulum, plasma membrane 71.43 73.33
Bra001171.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 50.65 70.91
Bra032129.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 68.83 70.67
Bra011209.1-P Field mustard extracellular 67.53 69.33
Bra000104.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 46.75 66.67
Bra011208.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 62.34 64.86
Bra017095.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 45.45 64.81
Solyc07g005730.2.1 Tomato endoplasmic reticulum, extracellular 58.44 63.38
PGSC0003DMT400028949 Potato endoplasmic reticulum, extracellular 58.44 63.38
Bra041021.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 44.16 62.96
Solyc07g005720.2.1 Tomato endoplasmic reticulum, plasma membrane 55.84 60.56
GSMUA_Achr7P19400_001 Banana extracellular, golgi, vacuole 51.95 59.7
Os06t0184800-01 Rice plasma membrane 57.14 57.89
TraesCS7A01G149300.1 Wheat extracellular, golgi, plasma membrane 54.55 55.26
TraesCS7D01G150900.1 Wheat extracellular, golgi, vacuole 53.25 53.95
GSMUA_Achr7P16140_001 Banana endoplasmic reticulum, extracellular, golgi 45.45 50.72
Zm00001d045096_P001 Maize endoplasmic reticulum, extracellular, golgi 48.05 49.33
EER89340 Sorghum extracellular, golgi 48.05 48.68
KRH72320 Soybean plasma membrane 46.75 32.43
TraesCS7B01G053000.1 Wheat cytosol, nucleus, plasma membrane 54.55 21.99
Protein Annotations
EnsemblPlants:Bra026283.1EnsemblPlants:Bra026283.1-PEnsemblPlantsGene:Bra026283GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:PMP3PANTHER:PTHR21659PANTHER:PTHR21659:SF34PFAM:PF01679TMHMM:TMhelixUniParc:UPI0002543F33
UniProt:M4EBX4MapMan:35.1::::
Description
AT4G28088 (E=1e-041) | hydrophobic protein, putative / low temperature and salt responsive protein, putative
Coordinates
chrA01:-:10231006..10231342
Molecular Weight (calculated)
8782.0 Da
IEP (calculated)
4.809
GRAVY (calculated)
0.810
Length
77 amino acids
Sequence
(BLAST)
1: MANGCEICCE IMIAILLPPL GVCLRHGCCT TEFMICLILT LLGYIPGIIY ALYAIVYVDR DQFFDEYRRP LFYAHSP
Best Arabidopsis Sequence Match ( AT4G28088.1 )
(BLAST)
1: MANGCEICCE IMIAILIPPL GVCLRHGCCT TEFMICLILT LLGYVPGIIY ALYAIVYVDR DQFFDEYRRP LFYAQSP
Arabidopsis Description
Low temperature and salt responsive protein family [Source:UniProtKB/TrEMBL;Acc:F4JKH9]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.