Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05209 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 100.0 | 100.0 |
| AT3G05880.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 85.19 | 85.19 |
| Bra000104.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 75.93 | 75.93 |
| Bra017095.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 74.07 | 74.07 |
| Bra001171.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 72.22 | 70.91 |
| PGSC0003DMT400046962 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 72.22 | 69.64 |
| Solyc01g102290.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 72.22 | 69.64 |
| Os03t0370600-00 | Rice | golgi, plasma membrane, vacuole | 64.81 | 54.69 |
| OQU92539 | Sorghum | extracellular | 57.41 | 50.82 |
| Bra024053.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 68.52 | 49.33 |
| Bra011208.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 66.67 | 48.65 |
| Zm00001d047419_P001 | Maize | extracellular, golgi, vacuole | 53.7 | 48.33 |
| Bra011209.1-P | Field mustard | extracellular | 62.96 | 45.33 |
| Bra026283.1-P | Field mustard | endoplasmic reticulum, extracellular | 62.96 | 44.16 |
| Bra032129.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 61.11 | 44.0 |
| PGSC0003DMT400046963 | Potato | endoplasmic reticulum, plasma membrane | 57.41 | 43.06 |
| TraesCS2A01G582800.1 | Wheat | plasma membrane | 61.11 | 30.84 |
| TraesCS2D01G597300.1 | Wheat | plasma membrane | 61.11 | 27.73 |
| TraesCS2B01G603700.1 | Wheat | plasma membrane | 61.11 | 24.81 |
Protein Annotations
| EnsemblPlants:Bra041021.1 | EnsemblPlants:Bra041021.1-P | EnsemblPlantsGene:Bra041021 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:PMP3 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF59 | PFAM:PF01679 | ScanProsite:PS01309 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000253EBC4 | UniProt:M4FIU2 | MapMan:35.2 | : | : |
Description
AT3G05880 (E=9e-018) RCI2A | RCI2A (RARE-COLD-INDUCIBLE 2A)
Coordinates
chrScaffold000385:+:3587..3861
Molecular Weight (calculated)
5962.8 Da
IEP (calculated)
6.213
GRAVY (calculated)
1.513
Length
54 amino acids
Sequence
(BLAST)
(BLAST)
1: MGTATFIDIL LAILLPPLGV FLRYGCGVEF WICLVLTLLG YLPGILYALY VLTK
1: MSTATFVDII IAILLPPLGV FLRFGCGVEF WICLVLTLLG YIPGIIYAIY VLTK
Arabidopsis Description
RCI2ARCI2A [Source:UniProtKB/TrEMBL;Acc:A0A178V7D5]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.