Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G597300.1 | Wheat | plasma membrane | 81.2 | 90.76 |
| TraesCS2A01G582800.1 | Wheat | plasma membrane | 70.68 | 87.85 |
| TraesCS2B01G177100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 27.82 | 64.91 |
| AT3G05890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 26.32 | 64.81 |
| Os03t0370600-00 | Rice | golgi, plasma membrane, vacuole | 30.83 | 64.06 |
| OQU92539 | Sorghum | extracellular | 29.32 | 63.93 |
| TraesCS1B01G100100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 26.32 | 63.64 |
| CDY49984 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 25.56 | 62.96 |
| TraesCS4B01G197300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 25.56 | 62.96 |
| Bra041021.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 24.81 | 61.11 |
| CDY05209 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 24.81 | 61.11 |
| PGSC0003DMT400046962 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 24.81 | 58.93 |
| Bra001171.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 24.06 | 58.18 |
| CDX74126 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 24.06 | 58.18 |
| TraesCS1B01G080300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 23.31 | 57.41 |
| Solyc01g102290.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 24.06 | 57.14 |
| Zm00001d047419_P001 | Maize | extracellular, golgi, vacuole | 25.56 | 56.67 |
| CDY49985 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 23.31 | 56.36 |
| TraesCS5B01G362400.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 26.32 | 49.3 |
| TraesCS5B01G362500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 25.56 | 46.58 |
| TraesCS7B01G411100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 21.8 | 37.66 |
| TraesCS7B01G411400.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 20.3 | 35.53 |
| PGSC0003DMT400046963 | Potato | endoplasmic reticulum, plasma membrane | 18.05 | 33.33 |
| TraesCS7B01G053000.1 | Wheat | cytosol, nucleus, plasma membrane | 18.8 | 13.09 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G603700.1 | EnsemblPlantsGene:TraesCS2B01G603700 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:PMP3 |
| PANTHER:PTHR21659 | PANTHER:PTHR21659:SF41 | PFAM:PF01679 | ScanProsite:PS01309 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:785820983..785821555
Molecular Weight (calculated)
14246.7 Da
IEP (calculated)
3.852
GRAVY (calculated)
0.410
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESAVIAPP LQPMTPPQPM AENATEAPPQ PMAPPQQMAE NATAAPPPQP MAENATAAPP PQPMVENATV VVVVPPPPPD STTTFLCLIL AFFLPPLGVF
101: LKYKCEIEFW ICLILTFLAY APGIIYAVWV IVK
101: LKYKCEIEFW ICLILTFLAY APGIIYAVWV IVK
1: MSTATFVDII IAILLPPLGV FLRFGCGVEF WICLVLTLLG YIPGIIYAIY VLTK
Arabidopsis Description
RCI2ARCI2A [Source:UniProtKB/TrEMBL;Acc:A0A178V7D5]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.