Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 5
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os07t0635900-01 | Rice | endoplasmic reticulum, plasma membrane | 67.19 | 76.79 |
| Zm00001d047419_P001 | Maize | extracellular, golgi, vacuole | 64.06 | 68.33 |
| Bra001171.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 57.81 | 67.27 |
| CDX74126 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 57.81 | 67.27 |
| AT3G05890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 56.25 | 66.67 |
| CDY49984 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 56.25 | 66.67 |
| Solyc01g102290.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 57.81 | 66.07 |
| CDY49985 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 56.25 | 65.45 |
| Bra041021.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 54.69 | 64.81 |
| Os03t0286900-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 54.69 | 64.81 |
| CDY05209 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 54.69 | 64.81 |
| OQU92539 | Sorghum | extracellular | 60.94 | 63.93 |
| Os05t0122700-01 | Rice | endoplasmic reticulum, plasma membrane | 53.12 | 62.96 |
| PGSC0003DMT400046962 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 54.69 | 62.5 |
| Os09t0558100-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 59.38 | 52.78 |
| PGSC0003DMT400046963 | Potato | endoplasmic reticulum, plasma membrane | 46.88 | 41.67 |
| Os06t0184800-01 | Rice | plasma membrane | 46.88 | 39.47 |
| TraesCS2A01G582800.1 | Wheat | plasma membrane | 62.5 | 37.38 |
| TraesCS2D01G597300.1 | Wheat | plasma membrane | 62.5 | 33.61 |
| TraesCS2B01G603700.1 | Wheat | plasma membrane | 64.06 | 30.83 |
| Os06t0651900-01 | Rice | extracellular, golgi, plasma membrane | 35.94 | 29.49 |
Protein Annotations
| MapMan:35.2 | EntrezGene:4344028 | ProteinID:AAG46140.1 | ProteinID:ABF96175.1 | EMBL:AK121089 | EMBL:AY554050 |
| EMBL:AY607689 | ProteinID:BAC16385.1 | ProteinID:BAF12114.1 | ProteinID:BAF22304.1 | ProteinID:BAS84363.1 | ProteinID:BAT02817.1 |
| ProteinID:EAZ27072.1 | ProteinID:EAZ40796.1 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0009409 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 |
| GO:GO:0009737 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:Os03g0370600 | EnsemblPlants:Os03t0370600-00 | PFAM:PF01679 |
| InterPro:PMP3 | ScanProsite:PS01309 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF41 | UniProt:Q10KT8 | TMHMM:TMhelix |
| UniParc:UPI00000A79A3 | RefSeq:XP_015647973.1 | : | : | : | : |
Description
rare cold-inducible 2-3Similar to Hydrophobic protein LTI6A (Low temperature-induced protein 6A). (Os03t0370600-00)
Coordinates
chr3:-:14548912..14549608
Molecular Weight (calculated)
7165.1 Da
IEP (calculated)
4.629
GRAVY (calculated)
1.191
Length
64 amino acids
Sequence
(BLAST)
(BLAST)
1: MADRPPAMAD RTATFVDLVI AIILPPLGVF LKVGCEIEFW ICLLLTFLGY FPGIIYAVWV IVNH
1: MSTATFVDII IAILLPPLGV FLRFGCGVEF WICLVLTLLG YIPGIIYAIY VLTK
Arabidopsis Description
RCI2ARCI2A [Source:UniProtKB/TrEMBL;Acc:A0A178V7D5]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.