CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05209	Canola	endoplasmic reticulum, plasma membrane, vacuole	98.15	98.15
AT3G05880.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	87.04	87.04
CDY07689	Canola	endoplasmic reticulum, extracellular, plasma membrane	77.78	77.78
CDY14420	Canola	endoplasmic reticulum, extracellular, plasma membrane	77.78	77.78
CDY18362	Canola	endoplasmic reticulum, extracellular, plasma membrane	75.93	75.93
CDX93294	Canola	endoplasmic reticulum, extracellular, plasma membrane	75.93	75.93
CDX74126	Canola	endoplasmic reticulum, plasma membrane, vacuole	74.07	72.73
PGSC0003DMT400046962	Potato	endoplasmic reticulum, extracellular, plasma membrane	74.07	71.43
CDY49985	Canola	endoplasmic reticulum, plasma membrane, vacuole	72.22	70.91
Solyc01g102290.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	72.22	69.64
CDX88232	Canola	golgi, plasma membrane, vacuole	79.63	69.35
CDX80578	Canola	golgi, plasma membrane, vacuole	77.78	63.64
CDY71166	Canola	endoplasmic reticulum, plasma membrane, vacuole	61.11	63.46
CDY48407	Canola	endoplasmic reticulum, plasma membrane, vacuole	59.26	61.54
CDY31781	Canola	endoplasmic reticulum, plasma membrane, vacuole	59.26	61.54
CDY71498	Canola	endoplasmic reticulum, plasma membrane, vacuole	57.41	59.62
CDY23796	Canola	endoplasmic reticulum, plasma membrane, vacuole	57.41	59.62
Os03t0370600-00	Rice	golgi, plasma membrane, vacuole	66.67	56.25
OQU92539	Sorghum	extracellular	59.26	52.46
CDX72260	Canola	endoplasmic reticulum, plasma membrane	70.37	50.67
CDY39234	Canola	endoplasmic reticulum, plasma membrane	70.37	50.67
Zm00001d047419_P001	Maize	extracellular, golgi, vacuole	55.56	50.0
CDY28200	Canola	endoplasmic reticulum, extracellular, plasma membrane	68.52	50.0
CDX68682	Canola	endoplasmic reticulum, plasma membrane	68.52	50.0
CDY28201	Canola	extracellular	64.81	46.67
CDY20271	Canola	endoplasmic reticulum, extracellular, plasma membrane	64.81	46.67
CDX68683	Canola	extracellular	64.81	46.67
CDY39689	Canola	endoplasmic reticulum, extracellular, plasma membrane	62.96	45.33
CDX81520	Canola	endoplasmic reticulum, extracellular, vacuole	62.96	45.33
CDX73908	Canola	endoplasmic reticulum, extracellular, vacuole	62.96	45.33
CDX87926	Canola	endoplasmic reticulum, plasma membrane, vacuole	61.11	44.0
PGSC0003DMT400046963	Potato	endoplasmic reticulum, plasma membrane	55.56	41.67
TraesCS2A01G582800.1	Wheat	plasma membrane	62.96	31.78
TraesCS2D01G597300.1	Wheat	plasma membrane	62.96	28.57
TraesCS2B01G603700.1	Wheat	plasma membrane	62.96	25.56
CDX77737	Canola	plasma membrane	59.26	18.82

Protein Annotations

EnsemblPlants:CDY49984	EnsemblPlantsGene:GSBRNA2T00094183001	GO:A0A078IKN0	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:PMP3	PANTHER:PTHR21659	PANTHER:PTHR21659:SF59	PFAM:PF01679	ProteinID:CDY49984	ProteinID:CDY49984.1
ScanProsite:PS01309	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EC407A	UniProt:A0A078IKN0	MapMan:35.2

Description

BnaC03g34410DBnaC03g34410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKN0]

Coordinates

chrLK032873:-:24333..24683

Molecular Weight (calculated)

5962.8 Da

IEP (calculated)

6.213

GRAVY (calculated)

1.526

Length

54 amino acids

Sequence
(BLAST)

1: MGTATFIDIL LAILLPPLGV FLRYGCGVEF WICLVLTLLG YLPGIIYALY VLTK

Best Arabidopsis Sequence Match ( AT3G05880.1 )
(BLAST)

1: MSTATFVDII IAILLPPLGV FLRFGCGVEF WICLVLTLLG YIPGIIYAIY VLTK

Arabidopsis Description

RCI2ARCI2A [Source:UniProtKB/TrEMBL;Acc:A0A178V7D5]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.