CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plasma membrane, vacuole

Predictor Summary:

extracellular 3
golgi 4
plasma membrane 4
endoplasmic reticulum 3
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80578	Canola	golgi, plasma membrane, vacuole	98.39	92.42
TraesCS1D01G083900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	80.65	90.91
TraesCS1B01G100100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	80.65	90.91
TraesCS1A01G082500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	80.65	87.72
GSMUA_Achr2P18430_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	80.65	87.72
Zm00001d024778_P001	Maize	plasma membrane	77.42	82.76
Zm00001d040544_P001	Maize	golgi, plasma membrane, vacuole	75.81	82.46
Zm00001d008200_P001	Maize	golgi, plasma membrane, vacuole	75.81	82.46
KXG32309	Sorghum	golgi, plasma membrane, vacuole	75.81	82.46
EES18986	Sorghum	endoplasmic reticulum, extracellular	69.35	81.13
EES18987	Sorghum	endoplasmic reticulum, extracellular	74.19	80.7
CDY49984	Canola	endoplasmic reticulum, plasma membrane, vacuole	69.35	79.63
CDX74126	Canola	endoplasmic reticulum, plasma membrane, vacuole	69.35	78.18
CDY05209	Canola	endoplasmic reticulum, plasma membrane, vacuole	67.74	77.78
CDY49985	Canola	endoplasmic reticulum, plasma membrane, vacuole	67.74	76.36
CDY14420	Canola	endoplasmic reticulum, extracellular, plasma membrane	58.06	66.67
CDY18362	Canola	endoplasmic reticulum, extracellular, plasma membrane	58.06	66.67
CDY07689	Canola	endoplasmic reticulum, extracellular, plasma membrane	58.06	66.67
CDX93294	Canola	endoplasmic reticulum, extracellular, plasma membrane	58.06	66.67
CDY71498	Canola	endoplasmic reticulum, plasma membrane, vacuole	50.0	59.62
CDY71166	Canola	endoplasmic reticulum, plasma membrane, vacuole	50.0	59.62
CDY31781	Canola	endoplasmic reticulum, plasma membrane, vacuole	50.0	59.62
CDY48407	Canola	endoplasmic reticulum, plasma membrane, vacuole	48.39	57.69
CDY23796	Canola	endoplasmic reticulum, plasma membrane, vacuole	48.39	57.69
CDX68682	Canola	endoplasmic reticulum, plasma membrane	59.68	50.0
CDY28200	Canola	endoplasmic reticulum, extracellular, plasma membrane	59.68	50.0
CDY20271	Canola	endoplasmic reticulum, extracellular, plasma membrane	58.06	48.0
CDY39689	Canola	endoplasmic reticulum, extracellular, plasma membrane	56.45	46.67
CDY39234	Canola	endoplasmic reticulum, plasma membrane	54.84	45.33
CDX72260	Canola	endoplasmic reticulum, plasma membrane	54.84	45.33
CDY28201	Canola	extracellular	53.23	44.0
CDX68683	Canola	extracellular	53.23	44.0
CDX87926	Canola	endoplasmic reticulum, plasma membrane, vacuole	51.61	42.67
CDX81520	Canola	endoplasmic reticulum, extracellular, vacuole	51.61	42.67
CDX73908	Canola	endoplasmic reticulum, extracellular, vacuole	51.61	42.67
HORVU1Hr1G017700.2	Barley	plastid	80.65	37.88
CDX77737	Canola	plasma membrane	56.45	20.59

Protein Annotations

EnsemblPlants:CDX88232	EnsemblPlantsGene:GSBRNA2T00147710001	GO:A0A078DH00	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:PMP3	PANTHER:PTHR21659	PANTHER:PTHR21659:SF59	PFAM:PF01679	ProteinID:CDX88232	ProteinID:CDX88232.1
ScanProsite:PS01309	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE9E02	MapMan:35.2	:

Description

BnaA06g28230D

Coordinates

chrLK031854:+:1557993..1558838

Molecular Weight (calculated)

6677.4 Da

IEP (calculated)

5.587

GRAVY (calculated)

1.065

Length

62 amino acids

Sequence
(BLAST)

1: MADEGSGSGT ANCIDILLAI LLPPLGVFLK FGCHVEFWIC LALTFLGYIP GIIYAIYAIT KK

Best Arabidopsis Sequence Match ( AT3G05880.1 )
(BLAST)

1: MSTATFVDII IAILLPPLGV FLRFGCGVEF WICLVLTLLG YIPGIIYAIY VLTK

Arabidopsis Description

RCI2ARCI2A [Source:UniProtKB/TrEMBL;Acc:A0A178V7D5]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.