Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 3
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G083900.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 89.47 | 92.73 |
| TraesCS1B01G100100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 89.47 | 92.73 |
| GSMUA_Achr11P... | Banana | golgi, plasma membrane, vacuole | 91.23 | 91.23 |
| TraesCS1A01G082500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 89.47 | 89.47 |
| GSMUA_Achr9P16790_001 | Banana | endoplasmic reticulum, plasma membrane | 84.21 | 88.89 |
| GSMUA_Achr8P22180_001 | Banana | endoplasmic reticulum, plasma membrane | 82.46 | 87.04 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane, vacuole | 84.21 | 84.21 |
| GSMUA_Achr1P19010_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 84.21 | 84.21 |
| EES18986 | Sorghum | endoplasmic reticulum, extracellular | 77.19 | 83.02 |
| EES18987 | Sorghum | endoplasmic reticulum, extracellular | 82.46 | 82.46 |
| Zm00001d024778_P001 | Maize | plasma membrane | 82.46 | 81.03 |
| Zm00001d040544_P001 | Maize | golgi, plasma membrane, vacuole | 80.7 | 80.7 |
| Zm00001d008200_P001 | Maize | golgi, plasma membrane, vacuole | 80.7 | 80.7 |
| KXG32309 | Sorghum | golgi, plasma membrane, vacuole | 80.7 | 80.7 |
| CDX88232 | Canola | golgi, plasma membrane, vacuole | 87.72 | 80.65 |
| CDX80578 | Canola | golgi, plasma membrane, vacuole | 87.72 | 75.76 |
| GSMUA_Achr7P15490_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 61.4 | 64.81 |
| GSMUA_Achr4P04270_001 | Banana | plasma membrane | 63.16 | 49.32 |
| GSMUA_Achr7P19400_001 | Banana | extracellular, golgi, vacuole | 56.14 | 47.76 |
| GSMUA_Achr7P16140_001 | Banana | endoplasmic reticulum, extracellular, golgi | 52.63 | 43.48 |
| GSMUA_Achr4P12770_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 54.39 | 42.47 |
| HORVU1Hr1G017700.2 | Barley | plastid | 89.47 | 38.64 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P18430_001 | EnsemblPlants:GSMUA_Achr2T18430_001 | EnsemblPlantsGene:GSMUA_Achr2G18430_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:PMP3 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF59 | PFAM:PF01679 | ScanProsite:PS01309 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI00029572FF | UniProt:M0S934 | MapMan:35.2 | : | : |
Description
Hydrophobic protein LTI6B [Source:GMGC_GENE;Acc:GSMUA_Achr2G18430_001]
Coordinates
chr2:-:18850511..18850989
Molecular Weight (calculated)
6218.0 Da
IEP (calculated)
4.544
GRAVY (calculated)
1.298
Length
57 amino acids
Sequence
(BLAST)
(BLAST)
1: MADEGTANCI DIILAIILPP LGVFLKFGCK AEFWICLLLT ILGYIPGIIY AVYAITK
1: MSTATFVEII LAIILPPLGV FLKFGCKVEF WICLILTLFG YLPGILYALY IITK
Arabidopsis Description
RCI2BRCI2B [Source:UniProtKB/TrEMBL;Acc:A0A178VG66]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.