Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d040544_P001 | Maize | golgi, plasma membrane, vacuole | 96.49 | 96.49 |
| Zm00001d024778_P001 | Maize | plasma membrane | 82.46 | 81.03 |
| GSMUA_Achr2P18430_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 80.7 | 80.7 |
| Zm00001d022264_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 75.44 | 76.79 |
| CDX88232 | Canola | golgi, plasma membrane, vacuole | 82.46 | 75.81 |
| CDX80578 | Canola | golgi, plasma membrane, vacuole | 80.7 | 69.7 |
| Zm00001d035505_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 57.89 | 61.11 |
| Zm00001d028718_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 56.14 | 59.26 |
| Zm00001d047419_P001 | Maize | extracellular, golgi, vacuole | 56.14 | 53.33 |
| Zm00001d006329_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 61.4 | 48.61 |
| Zm00001d045096_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 49.12 | 37.33 |
| Zm00001d046834_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 49.12 | 36.84 |
Protein Annotations
| EMBL:EU955642 | EnsemblPlants:Zm00001d008200_P001 | EnsemblPlants:Zm00001d008200_T001 | EnsemblPlantsGene:Zm00001d008200 | EntrezGene:100281117 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:PMP3 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF59 | PFAM:PF01679 |
| ProteinID:AQK89177.1 | ScanProsite:PS01309 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0001700463 | UniProt:B6SSC7 |
| MapMan:35.2 | : | : | : | : | : |
Description
proteolipid membrane potential regulator7Hydrophobic protein LTI6B
Coordinates
chr8:-:985128..985854
Molecular Weight (calculated)
6393.3 Da
IEP (calculated)
6.282
GRAVY (calculated)
1.272
Length
57 amino acids
Sequence
(BLAST)
(BLAST)
1: MKEGTANCID ILIAIILPPL GVFLKFGCKV EFWLCLLLTF LAYLPGIIYA IYVITKD
1: MSTATFVDII IAILLPPLGV FLRFGCGVEF WICLVLTLLG YIPGIIYAIY VLTK
Arabidopsis Description
RCI2ARCI2A [Source:UniProtKB/TrEMBL;Acc:A0A178V7D5]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.