Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88740 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 92.11 | 92.11 |
| TraesCS7B01G411400.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 81.58 | 81.58 |
| TraesCS7A01G504000.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 80.26 | 80.26 |
| TraesCS7D01G491000.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 78.95 | 80.0 |
| TraesCS7D01G491500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 77.63 | 77.63 |
| TraesCS7D01G491100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 77.63 | 76.62 |
| TraesCS7B01G411100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 77.63 | 76.62 |
| Os06t0651900-01 | Rice | extracellular, golgi, plasma membrane | 76.32 | 74.36 |
| Zm00001d028718_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 38.16 | 53.7 |
| Zm00001d022264_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 38.16 | 51.79 |
| Zm00001d006329_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 48.68 | 51.39 |
| Zm00001d024778_P001 | Maize | plasma membrane | 38.16 | 50.0 |
| Zm00001d035505_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 35.53 | 50.0 |
| Zm00001d008200_P001 | Maize | golgi, plasma membrane, vacuole | 36.84 | 49.12 |
| Zm00001d040544_P001 | Maize | golgi, plasma membrane, vacuole | 35.53 | 47.37 |
| Zm00001d045096_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 44.74 | 45.33 |
| Zm00001d047419_P001 | Maize | extracellular, golgi, vacuole | 32.89 | 41.67 |
| HORVU7Hr1G113020.6 | Barley | plastid | 52.63 | 26.14 |
| HORVU6Hr1G024460.1 | Barley | extracellular, plasma membrane | 25.0 | 25.68 |
Protein Annotations
| EMBL:EU972902 | EnsemblPlants:Zm00001d046834_P001 | EnsemblPlants:Zm00001d046834_T001 | EnsemblPlantsGene:Zm00001d046834 | EntrezGene:100285559 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:PMP3 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF21 | PFAM:PF01679 |
| ProteinID:AQL05090.1 | TMHMM:TMhelix | UniParc:UPI000182F6C7 | UniProt:B6U6N7 | MapMan:35.2 | : |
Description
Low temperature and salt responsive protein
Coordinates
chr9:+:107877247..107878091
Molecular Weight (calculated)
8229.2 Da
IEP (calculated)
4.104
GRAVY (calculated)
0.766
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSGGCSTCL EVIFAAILPP LGVFFRYGCC SSEFFVSLLL TLLCYVPGVA YSLYVILRTP PEPPGIDGER PYDMLA
1: MANGCEICCE IMIAILIPPL GVCLRHGCCT TEFMICLILT LLGYVPGIIY ALYAIVYVDR DQFFDEYRRP LFYAQSP
Arabidopsis Description
Low temperature and salt responsive protein family [Source:UniProtKB/TrEMBL;Acc:F4JKH9]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.