CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88232	Canola	golgi, plasma membrane, vacuole	92.42	98.39
TraesCS1D01G083900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	75.76	90.91
TraesCS1B01G100100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	75.76	90.91
TraesCS1A01G082500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	75.76	87.72
GSMUA_Achr2P18430_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	75.76	87.72
Zm00001d024778_P001	Maize	plasma membrane	71.21	81.03
Zm00001d040544_P001	Maize	golgi, plasma membrane, vacuole	69.7	80.7
Zm00001d008200_P001	Maize	golgi, plasma membrane, vacuole	69.7	80.7
KXG32309	Sorghum	golgi, plasma membrane, vacuole	69.7	80.7
EES18986	Sorghum	endoplasmic reticulum, extracellular	63.64	79.25
EES18987	Sorghum	endoplasmic reticulum, extracellular	68.18	78.95
CDY49984	Canola	endoplasmic reticulum, plasma membrane, vacuole	63.64	77.78
CDX74126	Canola	endoplasmic reticulum, plasma membrane, vacuole	63.64	76.36
CDY05209	Canola	endoplasmic reticulum, plasma membrane, vacuole	62.12	75.93
CDY49985	Canola	endoplasmic reticulum, plasma membrane, vacuole	62.12	74.55
CDY14420	Canola	endoplasmic reticulum, extracellular, plasma membrane	54.55	66.67
CDY18362	Canola	endoplasmic reticulum, extracellular, plasma membrane	54.55	66.67
CDY07689	Canola	endoplasmic reticulum, extracellular, plasma membrane	54.55	66.67
CDX93294	Canola	endoplasmic reticulum, extracellular, plasma membrane	54.55	66.67
CDY71498	Canola	endoplasmic reticulum, plasma membrane, vacuole	45.45	57.69
CDY71166	Canola	endoplasmic reticulum, plasma membrane, vacuole	45.45	57.69
CDY31781	Canola	endoplasmic reticulum, plasma membrane, vacuole	45.45	57.69
CDY48407	Canola	endoplasmic reticulum, plasma membrane, vacuole	43.94	55.77
CDY23796	Canola	endoplasmic reticulum, plasma membrane, vacuole	43.94	55.77
CDX68682	Canola	endoplasmic reticulum, plasma membrane	54.55	48.65
CDY28200	Canola	endoplasmic reticulum, extracellular, plasma membrane	54.55	48.65
CDY39689	Canola	endoplasmic reticulum, extracellular, plasma membrane	54.55	48.0
CDY20271	Canola	endoplasmic reticulum, extracellular, plasma membrane	53.03	46.67
CDY39234	Canola	endoplasmic reticulum, plasma membrane	50.0	44.0
CDX72260	Canola	endoplasmic reticulum, plasma membrane	50.0	44.0
CDY28201	Canola	extracellular	48.48	42.67
CDX68683	Canola	extracellular	48.48	42.67
CDX87926	Canola	endoplasmic reticulum, plasma membrane, vacuole	46.97	41.33
CDX81520	Canola	endoplasmic reticulum, extracellular, vacuole	46.97	41.33
CDX73908	Canola	endoplasmic reticulum, extracellular, vacuole	46.97	41.33
HORVU1Hr1G017700.2	Barley	plastid	75.76	37.88
CDX77737	Canola	plasma membrane	51.52	20.0

Protein Annotations

EnsemblPlants:CDX80578	EnsemblPlantsGene:GSBRNA2T00133702001	GO:A0A078CZR7	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:PMP3	PANTHER:PTHR21659	PANTHER:PTHR21659:SF59	PFAM:PF01679	ProteinID:CDX80578	ProteinID:CDX80578.1
ScanProsite:PS01309	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EC4AED	MapMan:35.2	:

Description

BnaC07g28660D

Coordinates

chrLK031821:+:1437086..1437704

Molecular Weight (calculated)

6951.7 Da

IEP (calculated)

5.587

GRAVY (calculated)

0.970

Length

66 amino acids

Sequence
(BLAST)

1: MADEGSGSGS GSGTANCIDI VLAILLPPLG VFLKFGCHVE FWICLALTFL GYIPGIIYAI YAITKK

Best Arabidopsis Sequence Match ( AT3G05890.1 )
(BLAST)

1: MSTATFVEII LAIILPPLGV FLKFGCKVEF WICLILTLFG YLPGILYALY IITK

Arabidopsis Description

RCI2BRCI2B [Source:UniProtKB/TrEMBL;Acc:A0A178VG66]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.