Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- golgi 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G100100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 41.67 | 100.0 |
| TraesCS1D01G083900.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 41.67 | 100.0 |
| TraesCS1A01G082500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 41.67 | 96.49 |
| GSMUA_Achr2P18430_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 38.64 | 89.47 |
| EES18986 | Sorghum | endoplasmic reticulum, extracellular | 34.85 | 86.79 |
| Zm00001d024778_P001 | Maize | plasma membrane | 37.88 | 86.21 |
| EES18987 | Sorghum | endoplasmic reticulum, extracellular | 36.36 | 84.21 |
| HORVU2Hr1G027430.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 35.61 | 82.46 |
| CDX88232 | Canola | golgi, plasma membrane, vacuole | 37.88 | 80.65 |
| CDX80578 | Canola | golgi, plasma membrane, vacuole | 37.88 | 75.76 |
| HORVU4Hr1G057020.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 27.27 | 66.67 |
| HORVU4Hr1G057000.1 | Barley | plasma membrane | 29.55 | 43.82 |
| HORVU6Hr1G024460.1 | Barley | extracellular, plasma membrane | 15.15 | 27.03 |
| HORVU7Hr1G113020.6 | Barley | plastid | 18.18 | 15.69 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G017700.2 | EnsemblPlantsGene:HORVU1Hr1G017700 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:PMP3 |
| PANTHER:PTHR21659 | PANTHER:PTHR21659:SF59 | PFAM:PF01679 | ScanProsite:PS01309 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000B48524F | UniProt:A0A287ERT9 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:61118615..61119514
Molecular Weight (calculated)
14103.4 Da
IEP (calculated)
7.878
GRAVY (calculated)
0.463
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: TGPHASPRYF LPPFASPSPP STLDFSSPRL YNQSPAGYVC HPPPLPILLC SALLRSALLP PLHPPSEKSS PSAEGSTMAG TANCIDIILA IILPPLGVFL
101: KFGCGHEFWI CLLLTFLGYI PGIIYAIYAI TK
101: KFGCGHEFWI CLLLTFLGYI PGIIYAIYAI TK
1: MSTATFVDII IAILLPPLGV FLRFGCGVEF WICLVLTLLG YIPGIIYAIY VLTK
Arabidopsis Description
RCI2ARCI2A [Source:UniProtKB/TrEMBL;Acc:A0A178V7D5]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.