Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G197800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 100.0 | 100.0 |
| TraesCS4A01G107000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 100.0 | 100.0 |
| Bra000104.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 85.19 | 85.19 |
| CDY07689 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 85.19 | 85.19 |
| CDY14420 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 85.19 | 85.19 |
| Bra017095.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 83.33 | 83.33 |
| CDX93294 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 83.33 | 83.33 |
| CDY18362 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 83.33 | 83.33 |
| GSMUA_Achr7P15490_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 83.33 | 83.33 |
| AT2G38905.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 81.48 | 81.48 |
| Solyc04g049960.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 81.48 | 81.48 |
| KRH57776 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 79.63 | 79.63 |
| VIT_13s0019g03650.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 77.78 | 77.78 |
| KRH04745 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 75.93 | 75.93 |
| HORVU2Hr1G027430.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 61.11 | 57.89 |
| HORVU4Hr1G057000.1 | Barley | plasma membrane | 87.04 | 52.81 |
| HORVU6Hr1G024460.1 | Barley | extracellular, plasma membrane | 40.74 | 29.73 |
| HORVU1Hr1G017700.2 | Barley | plastid | 66.67 | 27.27 |
| HORVU7Hr1G113020.6 | Barley | plastid | 51.85 | 18.3 |
Protein Annotations
| EMBL:AK355815 | EMBL:AK357835 | EnsemblPlants:HORVU4Hr1G057020.2 | EnsemblPlantsGene:HORVU4Hr1G057020 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:PMP3 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF53 | PFAM:PF01679 | ScanProsite:PS01309 |
| TMHMM:TMhelix | UniParc:UPI000012E992 | UniProt:F2CW12 | MapMan:35.2 | : | : |
Description
Low temperature-induced protein lt101.2 [Source:UniProtKB/TrEMBL;Acc:F2CW12]
Coordinates
chrchr4H:-:478924698..478925470
Molecular Weight (calculated)
5913.7 Da
IEP (calculated)
4.258
GRAVY (calculated)
1.867
Length
54 amino acids
Sequence
(BLAST)
(BLAST)
1: MASATFIEVI LAIILPPVGV FLRYGLAVEF WICLLLTLLG YIPGIIYAVY VLVA
1: MGSETFLEII LAILLPPVGV FLRYGCGVEF WICLLLTILG YIPGIIYAIY VLVG
Arabidopsis Description
At2g38901/At2g38901 [Source:UniProtKB/TrEMBL;Acc:Q941D7]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.