Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- golgi 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G197700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 60.67 | 100.0 |
| TraesCS4B01G197300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 60.67 | 100.0 |
| TraesCS4A01G107100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 60.67 | 100.0 |
| Bra017095.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 52.81 | 87.04 |
| CDX93294 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 52.81 | 87.04 |
| CDY18362 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 52.81 | 87.04 |
| GSMUA_Achr7P15490_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 52.81 | 87.04 |
| HORVU4Hr1G057020.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 52.81 | 87.04 |
| Bra000104.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 51.69 | 85.19 |
| Solyc04g049960.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 51.69 | 85.19 |
| CDY14420 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 51.69 | 85.19 |
| CDY07689 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 51.69 | 85.19 |
| AT2G38905.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 51.69 | 85.19 |
| KRH57776 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 50.56 | 83.33 |
| VIT_13s0019g03650.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 49.44 | 81.48 |
| KRH04745 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 48.31 | 79.63 |
| HORVU2Hr1G027430.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 38.2 | 59.65 |
| HORVU6Hr1G024460.1 | Barley | extracellular, plasma membrane | 26.97 | 32.43 |
| HORVU1Hr1G017700.2 | Barley | plastid | 43.82 | 29.55 |
| HORVU7Hr1G113020.6 | Barley | plastid | 30.34 | 17.65 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G057000.1 | EnsemblPlantsGene:HORVU4Hr1G057000 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:PMP3 |
| PANTHER:PTHR21659 | PANTHER:PTHR21659:SF53 | PFAM:PF01679 | ScanProsite:PS01309 | TMHMM:TMhelix | UniParc:UPI000296849C |
| UniProt:M0VY60 | MapMan:35.1 | : | : | : | : |
Description
Low temperature-induced protein lt101.1 [Source:UniProtKB/TrEMBL;Acc:M0VY60]
Coordinates
chrchr4H:+:478728927..478729692
Molecular Weight (calculated)
10039.6 Da
IEP (calculated)
9.042
GRAVY (calculated)
0.540
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MDVYMIWQSK STNPGASFRS ESKEKERNQT QVKQTMGSAT VLEVILAIIL PPVGVFLRYK LGVEFWICLL LTILGYIPGI IYAVYVLVV
1: MGSETFLEII LAILLPPVGV FLRYGCGVEF WICLLLTILG YIPGIIYAIY VLVG
Arabidopsis Description
At2g38901/At2g38901 [Source:UniProtKB/TrEMBL;Acc:Q941D7]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.