Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23796 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 98.08 | 98.08 |
| CDY48407 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 88.46 | 88.46 |
| CDY71498 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 86.54 | 86.54 |
| CDY71166 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 86.54 | 86.54 |
| AT1G57550.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 75.0 | 75.0 |
| CDY49984 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 61.54 | 59.26 |
| CDY18362 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 61.54 | 59.26 |
| CDY14420 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 61.54 | 59.26 |
| CDX93294 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 61.54 | 59.26 |
| CDY05209 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 61.54 | 59.26 |
| CDY07689 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 61.54 | 59.26 |
| VIT_08s0040g02660.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 61.54 | 58.18 |
| Zm00001d028718_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 59.62 | 57.41 |
| EER92424 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 59.62 | 57.41 |
| Os03t0286900-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 57.69 | 55.56 |
| CDX74126 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 55.77 | 52.73 |
| CDY49985 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 55.77 | 52.73 |
| CDX88232 | Canola | golgi, plasma membrane, vacuole | 59.62 | 50.0 |
| CDX80578 | Canola | golgi, plasma membrane, vacuole | 57.69 | 45.45 |
| CDX68682 | Canola | endoplasmic reticulum, plasma membrane | 51.92 | 36.49 |
| CDY28200 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 51.92 | 36.49 |
| CDY39234 | Canola | endoplasmic reticulum, plasma membrane | 50.0 | 34.67 |
| CDY28201 | Canola | extracellular | 50.0 | 34.67 |
| CDX73908 | Canola | endoplasmic reticulum, extracellular, vacuole | 50.0 | 34.67 |
| CDX72260 | Canola | endoplasmic reticulum, plasma membrane | 50.0 | 34.67 |
| CDX68683 | Canola | extracellular | 50.0 | 34.67 |
| CDY20271 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 48.08 | 33.33 |
| CDX87926 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 48.08 | 33.33 |
| CDY39689 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 46.15 | 32.0 |
| CDX81520 | Canola | endoplasmic reticulum, extracellular, vacuole | 46.15 | 32.0 |
| CDX77737 | Canola | plasma membrane | 51.92 | 15.88 |
Protein Annotations
| EnsemblPlants:CDY31781 | EnsemblPlantsGene:GSBRNA2T00050448001 | GO:A0A078H1X5 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:PMP3 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF53 | PFAM:PF01679 | ProteinID:CDY31781 | ProteinID:CDY31781.1 |
| ScanProsite:PS01309 | TMHMM:TMhelix | UniParc:UPI0004EF36E4 | UniProt:A0A078H1X5 | MapMan:35.2 | : |
Description
BnaC01g27370DBnaC01g27370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1X5]
Coordinates
chrLK032279:+:147336..147595
Molecular Weight (calculated)
5841.6 Da
IEP (calculated)
6.257
GRAVY (calculated)
1.537
Length
52 amino acids
Sequence
(BLAST)
(BLAST)
1: MGSFLEILCA VLIPPLGVFL RFGCGLEFWL SLLLTFFGFI PGMVYAIWVL TK
1: MGSFLEVLCA IFIPPVGVFL RYGLGLEFWV CLLLTLFAFI PGLIYAIYVL TK
Arabidopsis Description
UPF0057 membrane protein At1g57550 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE70]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.