Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73908 | Canola | endoplasmic reticulum, extracellular, vacuole | 96.0 | 96.0 |
| CDX87926 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 96.0 | 96.0 |
| CDY28201 | Canola | extracellular | 90.67 | 90.67 |
| CDX68683 | Canola | extracellular | 90.67 | 90.67 |
| CDY39234 | Canola | endoplasmic reticulum, plasma membrane | 89.33 | 89.33 |
| CDX72260 | Canola | endoplasmic reticulum, plasma membrane | 86.67 | 86.67 |
| AT4G30660.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 78.67 | 79.73 |
| CDX68682 | Canola | endoplasmic reticulum, plasma membrane | 69.33 | 70.27 |
| CDY28200 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 69.33 | 70.27 |
| CDY20271 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 69.33 | 69.33 |
| CDY39689 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 68.0 | 68.0 |
| PGSC0003DMT400028949 | Potato | endoplasmic reticulum, extracellular | 60.0 | 63.38 |
| Solyc07g005730.2.1 | Tomato | endoplasmic reticulum, extracellular | 60.0 | 63.38 |
| CDY49984 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 45.33 | 62.96 |
| Solyc07g005720.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 58.67 | 61.97 |
| CDX74126 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 45.33 | 61.82 |
| CDY05209 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 44.0 | 61.11 |
| CDY49985 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 44.0 | 60.0 |
| CDY18362 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 42.67 | 59.26 |
| CDY14420 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 42.67 | 59.26 |
| CDY07689 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 42.67 | 59.26 |
| CDX93294 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 42.67 | 59.26 |
| GSMUA_Achr7P19400_001 | Banana | extracellular, golgi, vacuole | 50.67 | 56.72 |
| CDX88232 | Canola | golgi, plasma membrane, vacuole | 42.67 | 51.61 |
| GSMUA_Achr7P16140_001 | Banana | endoplasmic reticulum, extracellular, golgi | 46.67 | 50.72 |
| Os06t0184800-01 | Rice | plasma membrane | 49.33 | 48.68 |
| CDX80578 | Canola | golgi, plasma membrane, vacuole | 41.33 | 46.97 |
| CDY31781 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 32.0 | 46.15 |
| CDY71498 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 32.0 | 46.15 |
| CDY71166 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 32.0 | 46.15 |
| TraesCS7D01G150900.1 | Wheat | extracellular, golgi, vacuole | 46.67 | 46.05 |
| TraesCS7A01G149300.1 | Wheat | extracellular, golgi, plasma membrane | 45.33 | 44.74 |
| CDY48407 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 30.67 | 44.23 |
| CDY23796 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 30.67 | 44.23 |
| Zm00001d045096_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 42.67 | 42.67 |
| EER89340 | Sorghum | extracellular, golgi | 42.67 | 42.11 |
| CDX77737 | Canola | plasma membrane | 58.67 | 25.88 |
| TraesCS7B01G053000.1 | Wheat | cytosol, nucleus, plasma membrane | 45.33 | 17.8 |
Protein Annotations
| EnsemblPlants:CDX81520 | EnsemblPlantsGene:GSBRNA2T00135168001 | GO:A0A078CXJ0 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:PMP3 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF34 | PFAM:PF01679 | ProteinID:CDX81520 | ProteinID:CDX81520.1 |
| ScanProsite:PS01309 | SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0004EF0103 | MapMan:35.2 |
Description
BnaC02g18240D
Coordinates
chrLK031825:-:817599..819518
Molecular Weight (calculated)
8535.8 Da
IEP (calculated)
4.506
GRAVY (calculated)
0.895
Length
75 amino acids
Sequence
(BLAST)
(BLAST)
1: MPSKCEILCE ILIAILLPPL GVCLSRGCCT VEFLICLVLT IVGYVPDIIY ALYVIVFQKQ EEYFNEARRP LYYSA
1: MPSNCEILCE IIIAILLPPL GVCFRKGCCT VEFLICLVLT ILGYVPGIIY AIYVIVFQHR EEYFDEYRRP IYSA
Arabidopsis Description
UPF0057 membrane protein At4g30660 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUI0]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.