Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- golgi 4
- plasma membrane 5
- endoplasmic reticulum 5
- vacuole 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra041021.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 100.0 | 100.0 |
| CDY49984 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 98.15 | 98.15 |
| AT3G05880.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 85.19 | 85.19 |
| CDY14420 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 75.93 | 75.93 |
| CDY07689 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 75.93 | 75.93 |
| CDY18362 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 74.07 | 74.07 |
| CDX93294 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 74.07 | 74.07 |
| CDX74126 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 72.22 | 70.91 |
| Solyc01g102290.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 72.22 | 69.64 |
| PGSC0003DMT400046962 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 72.22 | 69.64 |
| CDY49985 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 70.37 | 69.09 |
| CDX88232 | Canola | golgi, plasma membrane, vacuole | 77.78 | 67.74 |
| CDY71166 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 61.11 | 63.46 |
| CDX80578 | Canola | golgi, plasma membrane, vacuole | 75.93 | 62.12 |
| CDY31781 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 59.26 | 61.54 |
| CDY71498 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 57.41 | 59.62 |
| CDY23796 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 57.41 | 59.62 |
| CDY48407 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 57.41 | 59.62 |
| Os03t0370600-00 | Rice | golgi, plasma membrane, vacuole | 64.81 | 54.69 |
| OQU92539 | Sorghum | extracellular | 57.41 | 50.82 |
| CDX72260 | Canola | endoplasmic reticulum, plasma membrane | 68.52 | 49.33 |
| CDY39234 | Canola | endoplasmic reticulum, plasma membrane | 68.52 | 49.33 |
| CDY28200 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 66.67 | 48.65 |
| CDX68682 | Canola | endoplasmic reticulum, plasma membrane | 66.67 | 48.65 |
| Zm00001d047419_P001 | Maize | extracellular, golgi, vacuole | 53.7 | 48.33 |
| CDY28201 | Canola | extracellular | 62.96 | 45.33 |
| CDY20271 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 62.96 | 45.33 |
| CDX68683 | Canola | extracellular | 62.96 | 45.33 |
| CDY39689 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 61.11 | 44.0 |
| CDX81520 | Canola | endoplasmic reticulum, extracellular, vacuole | 61.11 | 44.0 |
| CDX73908 | Canola | endoplasmic reticulum, extracellular, vacuole | 61.11 | 44.0 |
| PGSC0003DMT400046963 | Potato | endoplasmic reticulum, plasma membrane | 57.41 | 43.06 |
| CDX87926 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 59.26 | 42.67 |
| TraesCS2A01G582800.1 | Wheat | plasma membrane | 61.11 | 30.84 |
| TraesCS2D01G597300.1 | Wheat | plasma membrane | 61.11 | 27.73 |
| TraesCS2B01G603700.1 | Wheat | plasma membrane | 61.11 | 24.81 |
| CDX77737 | Canola | plasma membrane | 57.41 | 18.24 |
Protein Annotations
| EnsemblPlants:CDY05209 | EnsemblPlantsGene:GSBRNA2T00120018001 | GO:A0A078EX75 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:PMP3 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF59 | PFAM:PF01679 | ProteinID:CDY05209 | ProteinID:CDY05209.1 |
| ScanProsite:PS01309 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000253EBC4 | MapMan:35.2 | : |
Description
BnaC05g45940D
Coordinates
chrLK031960:-:374179..374522
Molecular Weight (calculated)
5962.8 Da
IEP (calculated)
6.213
GRAVY (calculated)
1.513
Length
54 amino acids
Sequence
(BLAST)
(BLAST)
1: MGTATFIDIL LAILLPPLGV FLRYGCGVEF WICLVLTLLG YLPGILYALY VLTK
1: MSTATFVDII IAILLPPLGV FLRFGCGVEF WICLVLTLLG YIPGIIYAIY VLTK
Arabidopsis Description
RCI2ARCI2A [Source:UniProtKB/TrEMBL;Acc:A0A178V7D5]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.