Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001171.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 100.0 | 100.0 |
| CDY49985 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 98.18 | 98.18 |
| AT3G05880.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 76.36 | 77.78 |
| CDY49984 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 72.73 | 74.07 |
| CDY05209 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 70.91 | 72.22 |
| CDX88232 | Canola | golgi, plasma membrane, vacuole | 78.18 | 69.35 |
| CDY14420 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 67.27 | 68.52 |
| CDY07689 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 67.27 | 68.52 |
| CDY18362 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 65.45 | 66.67 |
| CDX93294 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 65.45 | 66.67 |
| Solyc01g102290.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 65.45 | 64.29 |
| CDX80578 | Canola | golgi, plasma membrane, vacuole | 76.36 | 63.64 |
| PGSC0003DMT400046962 | Potato | endoplasmic reticulum, extracellular, plasma membrane | 61.82 | 60.71 |
| Os03t0370600-00 | Rice | golgi, plasma membrane, vacuole | 67.27 | 57.81 |
| CDY31781 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 52.73 | 55.77 |
| CDY71166 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 50.91 | 53.85 |
| CDY71498 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 50.91 | 53.85 |
| CDY23796 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 50.91 | 53.85 |
| Zm00001d047419_P001 | Maize | extracellular, golgi, vacuole | 58.18 | 53.33 |
| OQU92539 | Sorghum | extracellular | 58.18 | 52.46 |
| CDY48407 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 49.09 | 51.92 |
| CDX68682 | Canola | endoplasmic reticulum, plasma membrane | 69.09 | 51.35 |
| CDY28200 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 69.09 | 51.35 |
| CDY39234 | Canola | endoplasmic reticulum, plasma membrane | 67.27 | 49.33 |
| CDX72260 | Canola | endoplasmic reticulum, plasma membrane | 67.27 | 49.33 |
| CDY20271 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 65.45 | 48.0 |
| CDX68683 | Canola | extracellular | 65.45 | 48.0 |
| CDY28201 | Canola | extracellular | 65.45 | 48.0 |
| CDY39689 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 63.64 | 46.67 |
| CDX81520 | Canola | endoplasmic reticulum, extracellular, vacuole | 61.82 | 45.33 |
| CDX73908 | Canola | endoplasmic reticulum, extracellular, vacuole | 61.82 | 45.33 |
| PGSC0003DMT400046963 | Potato | endoplasmic reticulum, plasma membrane | 58.18 | 44.44 |
| CDX87926 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 60.0 | 44.0 |
| TraesCS2A01G582800.1 | Wheat | plasma membrane | 58.18 | 29.91 |
| TraesCS2D01G597300.1 | Wheat | plasma membrane | 58.18 | 26.89 |
| TraesCS2B01G603700.1 | Wheat | plasma membrane | 58.18 | 24.06 |
| CDX77737 | Canola | plasma membrane | 61.82 | 20.0 |
Protein Annotations
| EnsemblPlants:CDX74126 | EnsemblPlantsGene:GSBRNA2T00111883001 | GO:A0A078CAL8 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:PMP3 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF59 | PFAM:PF01679 | ProteinID:CDX74126 | ProteinID:CDX74126.1 |
| ScanProsite:PS01309 | TMHMM:TMhelix | UniParc:UPI0002540A9C | MapMan:35.2 | : | : |
Description
BnaA03g29210D
Coordinates
chrLK031800:+:1436991..1437642
Molecular Weight (calculated)
5999.8 Da
IEP (calculated)
4.479
GRAVY (calculated)
1.575
Length
55 amino acids
Sequence
(BLAST)
(BLAST)
1: MGAATVVEIL IAILLPPLGV FLKFGCSVEF WICLILTLLG YIPGIIYAVY AITRE
1: MSTATFVDII IAILLPPLGV FLRFGCGVEF WICLVLTLLG YIPGIIYAIY VLTK
Arabidopsis Description
RCI2ARCI2A [Source:UniProtKB/TrEMBL;Acc:A0A178V7D5]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.