CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 6
endoplasmic reticulum 5
vacuole 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane, vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001171.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
CDY49985	Canola	endoplasmic reticulum, plasma membrane, vacuole	98.18	98.18
AT3G05880.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	76.36	77.78
CDY49984	Canola	endoplasmic reticulum, plasma membrane, vacuole	72.73	74.07
CDY05209	Canola	endoplasmic reticulum, plasma membrane, vacuole	70.91	72.22
CDX88232	Canola	golgi, plasma membrane, vacuole	78.18	69.35
CDY14420	Canola	endoplasmic reticulum, extracellular, plasma membrane	67.27	68.52
CDY07689	Canola	endoplasmic reticulum, extracellular, plasma membrane	67.27	68.52
CDY18362	Canola	endoplasmic reticulum, extracellular, plasma membrane	65.45	66.67
CDX93294	Canola	endoplasmic reticulum, extracellular, plasma membrane	65.45	66.67
Solyc01g102290.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	65.45	64.29
CDX80578	Canola	golgi, plasma membrane, vacuole	76.36	63.64
PGSC0003DMT400046962	Potato	endoplasmic reticulum, extracellular, plasma membrane	61.82	60.71
Os03t0370600-00	Rice	golgi, plasma membrane, vacuole	67.27	57.81
CDY31781	Canola	endoplasmic reticulum, plasma membrane, vacuole	52.73	55.77
CDY71166	Canola	endoplasmic reticulum, plasma membrane, vacuole	50.91	53.85
CDY71498	Canola	endoplasmic reticulum, plasma membrane, vacuole	50.91	53.85
CDY23796	Canola	endoplasmic reticulum, plasma membrane, vacuole	50.91	53.85
Zm00001d047419_P001	Maize	extracellular, golgi, vacuole	58.18	53.33
OQU92539	Sorghum	extracellular	58.18	52.46
CDY48407	Canola	endoplasmic reticulum, plasma membrane, vacuole	49.09	51.92
CDX68682	Canola	endoplasmic reticulum, plasma membrane	69.09	51.35
CDY28200	Canola	endoplasmic reticulum, extracellular, plasma membrane	69.09	51.35
CDY39234	Canola	endoplasmic reticulum, plasma membrane	67.27	49.33
CDX72260	Canola	endoplasmic reticulum, plasma membrane	67.27	49.33
CDY20271	Canola	endoplasmic reticulum, extracellular, plasma membrane	65.45	48.0
CDX68683	Canola	extracellular	65.45	48.0
CDY28201	Canola	extracellular	65.45	48.0
CDY39689	Canola	endoplasmic reticulum, extracellular, plasma membrane	63.64	46.67
CDX81520	Canola	endoplasmic reticulum, extracellular, vacuole	61.82	45.33
CDX73908	Canola	endoplasmic reticulum, extracellular, vacuole	61.82	45.33
PGSC0003DMT400046963	Potato	endoplasmic reticulum, plasma membrane	58.18	44.44
CDX87926	Canola	endoplasmic reticulum, plasma membrane, vacuole	60.0	44.0
TraesCS2A01G582800.1	Wheat	plasma membrane	58.18	29.91
TraesCS2D01G597300.1	Wheat	plasma membrane	58.18	26.89
TraesCS2B01G603700.1	Wheat	plasma membrane	58.18	24.06
CDX77737	Canola	plasma membrane	61.82	20.0

Protein Annotations

EnsemblPlants:CDX74126	EnsemblPlantsGene:GSBRNA2T00111883001	GO:A0A078CAL8	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:PMP3	PANTHER:PTHR21659	PANTHER:PTHR21659:SF59	PFAM:PF01679	ProteinID:CDX74126	ProteinID:CDX74126.1
ScanProsite:PS01309	TMHMM:TMhelix	UniParc:UPI0002540A9C	MapMan:35.2	:	:

Description

BnaA03g29210D

Coordinates

chrLK031800:+:1436991..1437642

Molecular Weight (calculated)

5999.8 Da

IEP (calculated)

4.479

GRAVY (calculated)

1.575

Length

55 amino acids

Sequence
(BLAST)

1: MGAATVVEIL IAILLPPLGV FLKFGCSVEF WICLILTLLG YIPGIIYAVY AITRE

Best Arabidopsis Sequence Match ( AT3G05880.1 )
(BLAST)

1: MSTATFVDII IAILLPPLGV FLRFGCGVEF WICLVLTLLG YIPGIIYAIY VLTK

Arabidopsis Description

RCI2ARCI2A [Source:UniProtKB/TrEMBL;Acc:A0A178V7D5]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.