Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 4
- plasma membrane 6
- endoplasmic reticulum 5
- vacuole 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g102290.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 91.07 | 91.07 |
| CDY49984 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 71.43 | 74.07 |
| AT3G05890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 69.64 | 72.22 |
| Bra041021.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 69.64 | 72.22 |
| CDY05209 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 69.64 | 72.22 |
| Bra001171.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 60.71 | 61.82 |
| CDX74126 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 60.71 | 61.82 |
| CDY49985 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 58.93 | 60.0 |
| OQU92539 | Sorghum | extracellular | 60.71 | 55.74 |
| Zm00001d047419_P001 | Maize | extracellular, golgi, vacuole | 58.93 | 55.0 |
| Os03t0370600-00 | Rice | golgi, plasma membrane, vacuole | 62.5 | 54.69 |
| PGSC0003DMT400046963 | Potato | endoplasmic reticulum, plasma membrane | 67.86 | 52.78 |
| PGSC0003DMT400028949 | Potato | endoplasmic reticulum, extracellular | 48.21 | 38.03 |
| TraesCS2A01G582800.1 | Wheat | plasma membrane | 55.36 | 28.97 |
| TraesCS2D01G597300.1 | Wheat | plasma membrane | 55.36 | 26.05 |
| TraesCS2B01G603700.1 | Wheat | plasma membrane | 58.93 | 24.81 |
Protein Annotations
| EntrezGene:102605230 | EntrezGene:102605564 | MapMan:35.2 | GO:GO:0005575 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0009409 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009737 |
| GO:GO:0016020 | GO:GO:0016021 | UniProt:M1BJX9 | PFAM:PF01679 | EnsemblPlantsGene:PGSC0003DMG400018240 | PGSC:PGSC0003DMG400018240 |
| EnsemblPlants:PGSC0003DMT400046962 | InterPro:PMP3 | ScanProsite:PS01309 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF59 | TMHMM:TMhelix |
| UniParc:UPI0002960774 | RefSeq:XP_006358521.1 | SEG:seg | : | : | : |
Description
Low temperature and salt responsive protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018240]
Coordinates
chr1:-:78972223..78973351
Molecular Weight (calculated)
6359.3 Da
IEP (calculated)
6.214
GRAVY (calculated)
1.379
Length
56 amino acids
Sequence
(BLAST)
(BLAST)
1: MGDSTMTCID ILLAIILPPL GVFLKFKCQV EFWICVLLTL FGWLPGIIYA IWVLTK
1: MSTATFVEII LAIILPPLGV FLKFGCKVEF WICLILTLFG YLPGILYALY IITK
Arabidopsis Description
RCI2BRCI2B [Source:UniProtKB/TrEMBL;Acc:A0A178VG66]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.