Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 5
- endoplasmic reticulum 6
- plasma membrane 5
- vacuole 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39234 | Canola | endoplasmic reticulum, plasma membrane | 83.78 | 82.67 |
| Bra024053.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 83.78 | 82.67 |
| CDY28201 | Canola | extracellular | 82.43 | 81.33 |
| CDX72260 | Canola | endoplasmic reticulum, plasma membrane | 82.43 | 81.33 |
| Bra011209.1-P | Field mustard | extracellular | 82.43 | 81.33 |
| CDX68683 | Canola | extracellular | 82.43 | 81.33 |
| CDX73908 | Canola | endoplasmic reticulum, extracellular, vacuole | 81.08 | 80.0 |
| CDX81520 | Canola | endoplasmic reticulum, extracellular, vacuole | 79.73 | 78.67 |
| CDX87926 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 77.03 | 76.0 |
| AT2G24040.1 | Thale cress | plasma membrane | 75.68 | 74.67 |
| AT4G30650.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 72.97 | 73.97 |
| AT2G38905.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 51.35 | 70.37 |
| AT3G05880.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 50.0 | 68.52 |
| Solyc07g005730.2.1 | Tomato | endoplasmic reticulum, extracellular | 64.86 | 67.61 |
| PGSC0003DMT400028949 | Potato | endoplasmic reticulum, extracellular | 64.86 | 67.61 |
| AT4G28088.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 68.92 | 66.23 |
| Solyc07g005720.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 60.81 | 63.38 |
| GSMUA_Achr7P19400_001 | Banana | extracellular, golgi, vacuole | 54.05 | 59.7 |
| GSMUA_Achr7P16140_001 | Banana | endoplasmic reticulum, extracellular, golgi | 55.41 | 59.42 |
| AT3G05890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 41.89 | 57.41 |
| Os06t0184800-01 | Rice | plasma membrane | 56.76 | 55.26 |
| TraesCS7A01G149300.1 | Wheat | extracellular, golgi, plasma membrane | 54.05 | 52.63 |
| TraesCS7D01G150900.1 | Wheat | extracellular, golgi, vacuole | 54.05 | 52.63 |
| Zm00001d045096_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 48.65 | 48.0 |
| EER89340 | Sorghum | extracellular, golgi | 48.65 | 47.37 |
| AT1G57550.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 32.43 | 46.15 |
| TraesCS7B01G053000.1 | Wheat | cytosol, nucleus, plasma membrane | 54.05 | 20.94 |
Protein Annotations
| MapMan:35.1 | EntrezGene:829189 | UniProt:A0A178UYE9 | ProteinID:AEE85791.1 | ProteinID:AEE85792.1 | ArrayExpress:AT4G30660 |
| EnsemblPlantsGene:AT4G30660 | RefSeq:AT4G30660 | TAIR:AT4G30660 | RefSeq:AT4G30660-TAIR-G | EnsemblPlants:AT4G30660.1 | TAIR:AT4G30660.1 |
| EMBL:BT029529 | ProteinID:CAB52439.1 | ProteinID:CAB79784.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| RefSeq:NP_001154278.1 | RefSeq:NP_194795.1 | ProteinID:OAO98447.1 | PFAM:PF01679 | InterPro:PMP3 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS01309 |
| PANTHER:PTHR21659 | PANTHER:PTHR21659:SF34 | UniProt:Q9SUI0 | TMHMM:TMhelix | UniParc:UPI0000133436 | SEG:seg |
Description
UPF0057 membrane protein At4g30660 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUI0]
Coordinates
chr4:+:14955373..14956118
Molecular Weight (calculated)
8519.8 Da
IEP (calculated)
4.867
GRAVY (calculated)
0.893
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MPSNCEILCE IIIAILLPPL GVCFRKGCCT VEFLICLVLT ILGYVPGIIY AIYVIVFQHR EEYFDEYRRP IYSA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.