Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- vacuole 5
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011208.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 93.15 | 91.89 |
| CDY28200 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 93.15 | 91.89 |
| CDX68682 | Canola | endoplasmic reticulum, plasma membrane | 91.78 | 90.54 |
| AT4G30660.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 73.97 | 72.97 |
| AT2G38905.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 52.05 | 70.37 |
| AT3G05880.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 50.68 | 68.52 |
| Solyc07g005730.2.1 | Tomato | endoplasmic reticulum, extracellular | 63.01 | 64.79 |
| AT3G05890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 46.58 | 62.96 |
| PGSC0003DMT400028949 | Potato | endoplasmic reticulum, extracellular | 60.27 | 61.97 |
| AT2G24040.1 | Thale cress | plasma membrane | 61.64 | 60.0 |
| AT4G28088.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 63.01 | 59.74 |
| GSMUA_Achr7P19400_001 | Banana | extracellular, golgi, vacuole | 54.79 | 59.7 |
| Solyc07g005720.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 57.53 | 59.15 |
| GSMUA_Achr7P16140_001 | Banana | endoplasmic reticulum, extracellular, golgi | 50.68 | 53.62 |
| AT1G57550.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 35.62 | 50.0 |
| Os06t0184800-01 | Rice | plasma membrane | 52.05 | 50.0 |
| TraesCS7D01G150900.1 | Wheat | extracellular, golgi, vacuole | 49.32 | 47.37 |
| TraesCS7A01G149300.1 | Wheat | extracellular, golgi, plasma membrane | 47.95 | 46.05 |
| Zm00001d045096_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 45.21 | 44.0 |
| EER89340 | Sorghum | extracellular, golgi | 45.21 | 43.42 |
| CDX77737 | Canola | plasma membrane | 68.49 | 29.41 |
| TraesCS7B01G053000.1 | Wheat | cytosol, nucleus, plasma membrane | 47.95 | 18.32 |
Protein Annotations
| MapMan:35.1 | EntrezGene:829188 | UniProt:A0A178USA9 | EMBL:AB493709 | ProteinID:AEE85790.1 | ArrayExpress:AT4G30650 |
| EnsemblPlantsGene:AT4G30650 | RefSeq:AT4G30650 | TAIR:AT4G30650 | RefSeq:AT4G30650-TAIR-G | EnsemblPlants:AT4G30650.1 | TAIR:AT4G30650.1 |
| EMBL:BT010774 | EMBL:BT011262 | UniProt:C0SVK6 | ProteinID:CAB79783.1 | GO:GO:0005575 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0050832 |
| RefSeq:NP_194794.1 | ProteinID:OAO96718.1 | PFAM:PF01679 | InterPro:PMP3 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | ScanProsite:PS01309 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF34 |
| UniProt:Q9M095 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0000133435 | : | : |
Description
UPF0057 membrane protein At4g30650 [Source:UniProtKB/Swiss-Prot;Acc:Q9M095]
Coordinates
chr4:+:14954204..14955114
Molecular Weight (calculated)
7906.1 Da
IEP (calculated)
4.333
GRAVY (calculated)
1.142
Length
73 amino acids
Sequence
(BLAST)
(BLAST)
1: MASNMEVFCE ILIAILLPPL GVCLKRGCCT VEFLICLVLT ILGYIPGIIY ALYVIVFQNR EGSTELGAPL NSA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.