Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 4
- extracellular 4
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48407 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 78.85 | 78.85 |
| CDY23796 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 76.92 | 76.92 |
| CDY31781 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 75.0 | 75.0 |
| CDY71498 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 75.0 | 75.0 |
| CDY71166 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 73.08 | 73.08 |
| Os03t0286900-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 71.15 | 68.52 |
| EER92424 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 69.23 | 66.67 |
| Zm00001d028718_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 69.23 | 66.67 |
| AT2G38905.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 67.31 | 64.81 |
| VIT_08s0040g02660.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 65.38 | 61.82 |
| AT3G05880.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 63.46 | 61.11 |
| AT3G05890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 53.85 | 51.85 |
| AT4G30650.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 50.0 | 35.62 |
| AT2G24040.1 | Thale cress | plasma membrane | 48.08 | 33.33 |
| AT4G28088.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 48.08 | 32.47 |
| AT4G30660.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 46.15 | 32.43 |
Protein Annotations
| MapMan:35.2 | EntrezGene:842130 | ProteinID:AAG09091.1 | ProteinID:AAG50736.1 | ProteinID:AEE33434.1 | ArrayExpress:AT1G57550 |
| EnsemblPlantsGene:AT1G57550 | RefSeq:AT1G57550 | TAIR:AT1G57550 | RefSeq:AT1G57550-TAIR-G | EnsemblPlants:AT1G57550.1 | TAIR:AT1G57550.1 |
| EMBL:DQ446368 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_176067.1 | PFAM:PF01679 |
| InterPro:PMP3 | PO:PO:0000084 | PO:PO:0001016 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS01309 |
| PANTHER:PTHR21659 | PANTHER:PTHR21659:SF53 | UniProt:Q9FE70 | TMHMM:TMhelix | UniParc:UPI0000133433 | : |
Description
UPF0057 membrane protein At1g57550 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE70]
Coordinates
chr1:-:21312257..21312919
Molecular Weight (calculated)
5842.6 Da
IEP (calculated)
6.253
GRAVY (calculated)
1.638
Length
52 amino acids
Sequence
(BLAST)
(BLAST)
1: MGSFLEVLCA IFIPPVGVFL RYGLGLEFWV CLLLTLFAFI PGLIYAIYVL TK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.