Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28200 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 100.0 | 100.0 |
| CDX68682 | Canola | endoplasmic reticulum, plasma membrane | 97.3 | 97.3 |
| AT4G30650.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 91.89 | 93.15 |
| Bra024053.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 72.97 | 72.0 |
| Bra011209.1-P | Field mustard | extracellular | 71.62 | 70.67 |
| Bra001171.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 51.35 | 69.09 |
| Bra000104.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 48.65 | 66.67 |
| Bra041021.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 48.65 | 66.67 |
| Bra017095.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 48.65 | 66.67 |
| Solyc07g005730.2.1 | Tomato | endoplasmic reticulum, extracellular | 63.51 | 66.2 |
| PGSC0003DMT400028949 | Potato | endoplasmic reticulum, extracellular | 60.81 | 63.38 |
| Bra026283.1-P | Field mustard | endoplasmic reticulum, extracellular | 64.86 | 62.34 |
| Bra032129.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 62.16 | 61.33 |
| Solyc07g005720.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 58.11 | 60.56 |
| GSMUA_Achr7P19400_001 | Banana | extracellular, golgi, vacuole | 54.05 | 59.7 |
| GSMUA_Achr7P16140_001 | Banana | endoplasmic reticulum, extracellular, golgi | 52.7 | 56.52 |
| Os06t0184800-01 | Rice | plasma membrane | 52.7 | 51.32 |
| TraesCS7D01G150900.1 | Wheat | extracellular, golgi, vacuole | 51.35 | 50.0 |
| TraesCS7A01G149300.1 | Wheat | extracellular, golgi, plasma membrane | 50.0 | 48.68 |
| Zm00001d045096_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 47.3 | 46.67 |
| EER89340 | Sorghum | extracellular, golgi | 47.3 | 46.05 |
| CDX77737 | Canola | plasma membrane | 67.57 | 29.41 |
| TraesCS7B01G053000.1 | Wheat | cytosol, nucleus, plasma membrane | 50.0 | 19.37 |
Protein Annotations
| MapMan:35.1 | ProteinID:AAT11798 | ProteinID:AAT11798.1 | EMBL:AY601678 | EnsemblPlantsGene:Bra011208 | EnsemblPlants:Bra011208.1 |
| EnsemblPlants:Bra011208.1-P | GO:GO:0005575 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0050832 | PFAM:PF01679 | InterPro:PMP3 | ScanProsite:PS01309 |
| PANTHER:PTHR21659 | PANTHER:PTHR21659:SF34 | UniProt:Q6GYJ6 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI00003B12DC |
Description
AT4G30650 (E=9e-034) | hydrophobic protein, putative / low temperature and salt responsive protein, putative
Coordinates
chrA01:-:3324759..3325066
Molecular Weight (calculated)
8142.3 Da
IEP (calculated)
4.133
GRAVY (calculated)
0.969
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MASNMEVFCE ILIAILLPPL GVCLKRGCCT VEFLICLVLT ILGYIPGIIY ALYVIVFQNR EGETQDYSAP LNSA
1: MASNMEVFCE ILIAILLPPL GVCLKRGCCT VEFLICLVLT ILGYIPGIIY ALYVIVFQNR EGSTELGAPL NSA
Arabidopsis Description
UPF0057 membrane protein At4g30650 [Source:UniProtKB/Swiss-Prot;Acc:Q9M095]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.