Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68683 | Canola | extracellular | 100.0 | 100.0 |
| CDY28201 | Canola | extracellular | 100.0 | 100.0 |
| Bra024053.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 93.33 | 93.33 |
| AT4G30660.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 81.33 | 82.43 |
| Bra032129.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 72.0 | 72.0 |
| Bra011208.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 70.67 | 71.62 |
| Bra026283.1-P | Field mustard | endoplasmic reticulum, extracellular | 69.33 | 67.53 |
| Solyc07g005730.2.1 | Tomato | endoplasmic reticulum, extracellular | 62.67 | 66.2 |
| Solyc07g005720.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 62.67 | 66.2 |
| PGSC0003DMT400028949 | Potato | endoplasmic reticulum, extracellular | 62.67 | 66.2 |
| Bra001171.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 48.0 | 65.45 |
| Bra000104.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 45.33 | 62.96 |
| Bra041021.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 45.33 | 62.96 |
| Bra017095.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 45.33 | 62.96 |
| GSMUA_Achr7P19400_001 | Banana | extracellular, golgi, vacuole | 52.0 | 58.21 |
| GSMUA_Achr7P16140_001 | Banana | endoplasmic reticulum, extracellular, golgi | 50.67 | 55.07 |
| Os06t0184800-01 | Rice | plasma membrane | 53.33 | 52.63 |
| TraesCS7D01G150900.1 | Wheat | extracellular, golgi, vacuole | 50.67 | 50.0 |
| TraesCS7A01G149300.1 | Wheat | extracellular, golgi, plasma membrane | 49.33 | 48.68 |
| Zm00001d045096_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 46.67 | 46.67 |
| EER89340 | Sorghum | extracellular, golgi | 46.67 | 46.05 |
| TraesCS7B01G053000.1 | Wheat | cytosol, nucleus, plasma membrane | 49.33 | 19.37 |
Protein Annotations
| EnsemblPlants:Bra011209.1 | EnsemblPlants:Bra011209.1-P | EnsemblPlantsGene:Bra011209 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:PMP3 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF34 | PFAM:PF01679 | ScanProsite:PS01309 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0002546D90 | UniProt:M4D405 | MapMan:35.1 | : | : |
Description
AT4G30660 (E=3e-022) | hydrophobic protein, putative / low temperature and salt responsive protein, putative
Coordinates
chrA01:-:3323640..3324167
Molecular Weight (calculated)
8519.8 Da
IEP (calculated)
4.506
GRAVY (calculated)
0.855
Length
75 amino acids
Sequence
(BLAST)
(BLAST)
1: MPSKCEILCE ILIAILLPPL GVCLRRGCCT VEFLACLILT ILGYVPGIIY ALYVIVFQNQ EEYFDEARRP LYYSA
1: MPSNCEILCE IIIAILLPPL GVCFRKGCCT VEFLICLVLT ILGYVPGIIY AIYVIVFQHR EEYFDEYRRP IYSA
Arabidopsis Description
UPF0057 membrane protein At4g30660 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUI0]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.