Factsheet for Bra024053.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 6
nucleus 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39234	Canola	endoplasmic reticulum, plasma membrane	100.0	100.0
CDX72260	Canola	endoplasmic reticulum, plasma membrane	97.33	97.33
Bra011209.1-P	Field mustard	extracellular	93.33	93.33
AT4G30660.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	82.67	83.78
Bra032129.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	77.33	77.33
Bra011208.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	72.0	72.97
Bra026283.1-P	Field mustard	endoplasmic reticulum, extracellular	73.33	71.43
Bra041021.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	49.33	68.52
Solyc07g005730.2.1	Tomato	endoplasmic reticulum, extracellular	64.0	67.61
PGSC0003DMT400028949	Potato	endoplasmic reticulum, extracellular	64.0	67.61
Bra001171.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	49.33	67.27
Bra000104.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	48.0	66.67
Bra017095.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	46.67	64.81
Solyc07g005720.2.1	Tomato	endoplasmic reticulum, plasma membrane	60.0	63.38
GSMUA_Achr7P19400_001	Banana	extracellular, golgi, vacuole	53.33	59.7
Os06t0184800-01	Rice	plasma membrane	54.67	53.95
GSMUA_Achr7P16140_001	Banana	endoplasmic reticulum, extracellular, golgi	49.33	53.62
TraesCS7D01G150900.1	Wheat	extracellular, golgi, vacuole	52.0	51.32
TraesCS7A01G149300.1	Wheat	extracellular, golgi, plasma membrane	50.67	50.0
Zm00001d045096_P001	Maize	endoplasmic reticulum, extracellular, golgi	46.67	46.67
EER89340	Sorghum	extracellular, golgi	46.67	46.05
TraesCS7B01G053000.1	Wheat	cytosol, nucleus, plasma membrane	50.67	19.9

Protein Annotations

EnsemblPlants:Bra024053.1	EnsemblPlants:Bra024053.1-P	EnsemblPlantsGene:Bra024053	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:PMP3	PANTHER:PTHR21659	PANTHER:PTHR21659:SF34	PFAM:PF01679	ScanProsite:PS01309	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002540E38	UniProt:M4E5J9	MapMan:35.1	:	:

Description

AT4G30660 (E=7e-023) | hydrophobic protein, putative / low temperature and salt responsive protein, putative

Coordinates

chrA03:+:27951713..27952034

Molecular Weight (calculated)

8561.8 Da

IEP (calculated)

4.854

GRAVY (calculated)

0.864

Length

75 amino acids

Sequence
(BLAST)

1: MPSKCEILCE ILIAILLPPL GVCLRRGCCT VEFLICLVLT LLGYVPGIIY ALYVIVFQNR DEYFDEARRP LYYSA

Best Arabidopsis Sequence Match ( AT4G30660.2 )
(BLAST)

1: MPSNCEILCE IIIAILLPPL GVCFRKGCCT VEFLICLVLT ILGYVPGIIY AIYVIVFQHR EEYFDEYRRP IYSA

Arabidopsis Description

UPF0057 membrane protein At4g30660 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUI0]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.