Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P16790_001 | Banana | endoplasmic reticulum, plasma membrane | 94.44 | 94.44 |
| GSMUA_Achr2P18430_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 87.04 | 82.46 |
| GSMUA_Achr11P... | Banana | golgi, plasma membrane, vacuole | 83.33 | 78.95 |
| GSMUA_Achr1P19010_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 83.33 | 78.95 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane, vacuole | 81.48 | 77.19 |
| GSMUA_Achr7P15490_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 64.81 | 64.81 |
| GSMUA_Achr4P04270_001 | Banana | plasma membrane | 62.96 | 46.58 |
| GSMUA_Achr7P16140_001 | Banana | endoplasmic reticulum, extracellular, golgi | 59.26 | 46.38 |
| GSMUA_Achr7P19400_001 | Banana | extracellular, golgi, vacuole | 57.41 | 46.27 |
| GSMUA_Achr4P12770_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 55.56 | 41.1 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P22180_001 | EnsemblPlants:GSMUA_Achr8T22180_001 | EnsemblPlantsGene:GSMUA_Achr8G22180_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:PMP3 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF59 | PFAM:PF01679 | ScanProsite:PS01309 | TMHMM:TMhelix |
| UniParc:UPI00029597AA | UniProt:M0TSM1 | MapMan:35.2 | : | : | : |
Description
Hydrophobic protein LTI6B [Source:GMGC_GENE;Acc:GSMUA_Achr8G22180_001]
Coordinates
chr8:+:26870485..26870787
Molecular Weight (calculated)
5903.7 Da
IEP (calculated)
8.029
GRAVY (calculated)
1.519
Length
54 amino acids
Sequence
(BLAST)
(BLAST)
1: MGTATCLDLL VAIILPPLGV FLKFGCKVEF WLCLLLTILG YIPGIIYAVY AITK
1: MSTATFVDII IAILLPPLGV FLRFGCGVEF WICLVLTLLG YIPGIIYAIY VLTK
Arabidopsis Description
RCI2ARCI2A [Source:UniProtKB/TrEMBL;Acc:A0A178V7D5]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.