Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 4
- nucleus 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G157100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 94.64 | 92.98 |
| HORVU2Hr1G027430.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 94.64 | 92.98 |
| TraesCS2B01G177100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 94.64 | 92.98 |
| TraesCS2A01G152000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 94.64 | 92.98 |
| Zm00001d022264_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 89.29 | 89.29 |
| KXG36781 | Sorghum | golgi, plasma membrane, vacuole | 91.07 | 87.93 |
| GSMUA_Achr11P... | Banana | golgi, plasma membrane, vacuole | 82.14 | 80.7 |
| GSMUA_Achr1P19010_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 80.36 | 78.95 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane, vacuole | 78.57 | 77.19 |
| KRH33736 | Soybean | endoplasmic reticulum, plasma membrane | 76.79 | 75.44 |
| KRG90444 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 76.79 | 75.44 |
| VIT_14s0060g00280.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 82.14 | 73.02 |
| Os03t0370600-00 | Rice | golgi, plasma membrane, vacuole | 76.79 | 67.19 |
| Os05t0122700-01 | Rice | endoplasmic reticulum, plasma membrane | 60.71 | 62.96 |
| Os03t0286900-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 58.93 | 61.11 |
| Os09t0558100-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 64.29 | 50.0 |
| Os06t0184800-01 | Rice | plasma membrane | 53.57 | 39.47 |
| Os06t0651900-01 | Rice | extracellular, golgi, plasma membrane | 46.43 | 33.33 |
Protein Annotations
| MapMan:35.2 | EntrezGene:4344028 | EMBL:AK121089 | EMBL:AY554050 | EMBL:AY607689 | ProteinID:BAC16385.1 |
| ProteinID:BAF22304.1 | ProteinID:BAT02817.1 | ProteinID:EAZ40796.1 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009409 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009651 |
| GO:GO:0009719 | GO:GO:0009737 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:Os07g0635900 | EnsemblPlants:Os07t0635900-01 |
| PFAM:PF01679 | InterPro:PMP3 | ScanProsite:PS01309 | PANTHER:PTHR21659 | PANTHER:PTHR21659:SF59 | UniProt:Q8H5T6 |
| TMHMM:TMhelix | UniParc:UPI00000AD538 | RefSeq:XP_015647973.1 | SEG:seg | : | : |
Description
low temperature-induced low molecular weight integral membrane protein LTI6a, low temperature induced gene 6a, rare cold-inducible 2-10Hydrophobic protein LTI6A (Low temperature-induced protein 6A). (Os07t0635900-01)
Coordinates
chr7:+:26403675..26404722
Molecular Weight (calculated)
6230.0 Da
IEP (calculated)
4.370
GRAVY (calculated)
1.509
Length
56 amino acids
Sequence
(BLAST)
(BLAST)
1: MADSTATCID IILAIILPPL GVFFKFGCGI EFWICLLLTF FGYLPGIIYA VWVITK
1: MSTATFVEII LAIILPPLGV FLKFGCKVEF WICLILTLFG YLPGILYALY IITK
Arabidopsis Description
RCI2BRCI2B [Source:UniProtKB/TrEMBL;Acc:A0A178VG66]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.