Factsheet for VIT_08s0007g01760.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
cytosol 2
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, mitochondrion, peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052432	Potato	endoplasmic reticulum, plasma membrane	67.7	67.18
KRH49269	Soybean	endoplasmic reticulum, plasma membrane	67.7	66.16
Solyc09g013070.2.1	Tomato	endoplasmic reticulum, extracellular	33.46	65.65
KRH27711	Soybean	endoplasmic reticulum, plasma membrane	66.93	65.4
Bra017142.1-P	Field mustard	endoplasmic reticulum, plastid	51.75	64.56
AT2G38050.1	Thale cress	endoplasmic reticulum	64.59	63.36
PGSC0003DMT400049423	Potato	endoplasmic reticulum, plastid	58.75	63.18
CDY18409	Canola	cytosol, endoplasmic reticulum, plasma membrane	63.81	62.6
CDX93333	Canola	cytosol, endoplasmic reticulum, plasma membrane	63.03	62.07
Solyc10g086500.1.1	Tomato	extracellular, plasma membrane	59.92	59.92
GSMUA_Achr4P11670_001	Banana	plasma membrane	58.37	56.39
TraesCS3D01G359100.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	49.81	48.12
OQU87873	Sorghum	plasma membrane	49.03	47.73
Zm00001d042843_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	48.25	47.33
TraesCS3B01G397800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	48.64	46.47
Os01t0851600-01	Rice	endoplasmic reticulum, golgi	48.25	46.27
TraesCS3A01G366000.1	Wheat	plasma membrane	48.25	45.93
HORVU3Hr1G085400.1	Barley	plasma membrane	48.25	45.76
Os11t0184100-01	Rice	endoplasmic reticulum, plasma membrane, plastid	44.36	41.91
VIT_19s0014g00080.t01	Wine grape	plastid	20.23	21.49
VIT_13s0067g01830.t01	Wine grape	plastid	18.68	21.43
VIT_13s0067g01730.t01	Wine grape	extracellular, vacuole	14.4	20.0

Protein Annotations

KEGG:00140+1.3.1.22	KEGG:00905+1.3.1.22	EntrezGene:100261294	wikigene:100261294	MapMan:11.3.1.3	InterPro:3-oxo-5-alpha-steroid_4-DH
InterPro:3-oxo-5_a-steroid_4-DH_C	EMBL:AM443604	ProteinID:CAN63063	ProteinID:CAN63063.1	ProteinID:CBI30434	ProteinID:CBI30434.3
UniProt:D7THB8	EMBL:FN595991	GO:GO:0003674	GO:GO:0003824	GO:GO:0003865	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008202	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016132	GO:GO:0016627
GO:GO:0055114	InterPro:IPR001104	EntrezGene:LOC100261294	wikigene:LOC100261294	PFAM:PF02544	PIRSF:PIRSF015596
PFscan:PS50244	PANTHER:PTHR10556	PANTHER:PTHR10556:SF37	TIGR:TC57918	TMHMM:TMhelix	UniParc:UPI00015C97D1
ArrayExpress:VIT_08s0007g01760	EnsemblPlantsGene:VIT_08s0007g01760	EnsemblPlants:VIT_08s0007g01760.t01	unigene:Vvi.14243	RefSeq:XP_002277900	RefSeq:XP_002277900.1

Description

No Description!

Coordinates

chr8:-:15825847..15826714

Molecular Weight (calculated)

29747.2 Da

IEP (calculated)

9.735

GRAVY (calculated)

0.168

Length

257 amino acids

Sequence
(BLAST)

001: MDWDRTLFHN SLIALYLIAP PTFISLRFLQ APYGKHHRSG WGPTVPPSLA WFLMESPTVW LTLLIYPLGD RSSNPRSLIL ISIYLFHYIH RTLIYPLHLR
101: NSTAAKRNGF PVSVALMAFG FNLLNAYLQA RWVSHYANYE DDGWFWWRFW VGLVIFLDGM LVNVRSDLAL VGLKSQGGGY KVPRGGWFEL VSCANYFGEV
201: VEWLGWAVMT WSWVGLGFLL YTCANLVPRA RANHKWYLEK FGEDYPKGRK AVIPFLY

Best Arabidopsis Sequence Match ( AT2G38050.1 )
(BLAST)

001: MEEIADKTFF RYCLLTLIFA GPPTAVLLKF LQAPYGKHNR TGWGPTVSPP IAWFVMESPT LWLTLLLFPF GRHALNPKSL LLFSPYLIHY FHRTIIYPLR
101: LFRSSFPAGK NGFPITIAAL AFTFNLLNGY IQARWVSHYK DDYEDGNWFW WRFVIGMVVF ITGMYINITS DRTLVRLKKE NRGGYVIPRG GWFELVSCPN
201: YFGEAIEWLG WAVMTWSWAG IGFFLYTCSN LFPRARASHK WYIAKFKEEY PKTRKAVIPF VY

Arabidopsis Description

DET2Steroid 5-alpha-reductase DET2 [Source:UniProtKB/Swiss-Prot;Acc:Q38944]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.