Factsheet for VIT_13s0067g01830.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
peroxisome 1
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g01730.t01	Wine grape	extracellular, vacuole	53.57	64.86
VIT_19s0014g00080.t01	Wine grape	plastid	62.95	58.26
KRH70289	Soybean	endoplasmic reticulum, plasma membrane	66.96	56.39
PGSC0003DMT400002569	Potato	extracellular, peroxisome, plasma membrane	58.48	54.58
KRH70288	Soybean	mitochondrion	63.39	53.38
PGSC0003DMT400002570	Potato	endoplasmic reticulum, plasma membrane	62.95	53.01
Solyc11g006270.1.1	Tomato	plastid	62.05	52.26
GSMUA_Achr5P02670_001	Banana	endoplasmic reticulum	60.71	51.71
GSMUA_Achr2P12820_001	Banana	peroxisome, plasma membrane, plastid	60.71	51.32
Solyc11g006290.1.1	Tomato	plasma membrane	59.82	50.95
Zm00001d018846_P001	Maize	peroxisome, plastid, vacuole	53.12	47.04
HORVU1Hr1G013970.1	Barley	endoplasmic reticulum	55.8	45.13
TraesCS2A01G113600.1	Wheat	endoplasmic reticulum, vacuole	53.12	43.75
EER98015	Sorghum	endoplasmic reticulum, plasma membrane	53.57	41.96
Os07t0162100-00	Rice	endoplasmic reticulum	51.79	41.88
TraesCS2D01G249800.1	Wheat	plastid	44.64	40.0
Zm00001d018847_P001	Maize	endoplasmic reticulum, vacuole	48.21	39.13
Zm00001d007910_P001	Maize	plasma membrane	49.11	38.87
TraesCS2D01G114200.1	Wheat	plastid	53.12	36.96
TraesCS2B01G269300.1	Wheat	mitochondrion	44.64	34.6
VIT_08s0007g01760.t01	Wine grape	endoplasmic reticulum	21.43	18.68

Protein Annotations

EntrezGene:100260916	wikigene:100260916	InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:50.1.3	ProteinID:CCB62600	ProteinID:CCB62600.1
UniProt:F6I6N2	EMBL:FN596756	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0016627	GO:GO:0055114	InterPro:IPR001104	EntrezGene:LOC100260916
wikigene:LOC100260916	PFAM:PF02544	PFscan:PS50244	PANTHER:PTHR10556	PANTHER:PTHR10556:SF35	TMHMM:TMhelix
UniParc:UPI0001984886	ArrayExpress:VIT_13s0067g01830	EnsemblPlantsGene:VIT_13s0067g01830	EnsemblPlants:VIT_13s0067g01830.t01	RefSeq:XP_002272523	RefSeq:XP_002272523.1

Description

No Description!

Coordinates

chr13_random:+:1003793..1005554

Molecular Weight (calculated)

25595.7 Da

IEP (calculated)

10.106

GRAVY (calculated)

0.333

Length

224 amino acids

Sequence
(BLAST)

001: MGINLQYSKL WNPNSKRIKV SSRTGMLLLY TPAFLVGFAS FWIFPEKGFR PLLVTTALTI HFFKRVLEVL FVHKYSGGMV LDSIILISSG YSTTTATMIH
101: AQHIAQGFME PAIDLKCPGI LLFSVGICGN FYHHYLLSKL RGKGEKGYKI PKGGLFHQVI CPHYLFEILE FVGVFFISQT LYSLSFTIST TLYLIGRSYA
201: TRKWYISKFE NFPRETKALI PYIF

Best Arabidopsis Sequence Match ( AT5G16010.1 )
(BLAST)

001: MEMVTSFVYP PPPSILLNCM SVVGVAALAN IGWSEIRGNH LKYSKFGVSS SSPQPQKERF GSISSRNGML LLYTPAFLAA ASSFFVVPSD DLRFLLLKSA
101: LALHFFKRVF EVLFIHKYSG GMAIDSALTI SSSYFSSTAL MLYSQNLTLG LTEPSFDMKL AGVVMFVVGI VGNLYHHVLL AKLRKEDGKK EYKIPKGGLF
201: DIIICPHYLF EILVFWSFFL ISQTIYSFSF AMGTMLYLIG RSYATRTWYL SKFDDFPKHI KALIPFVF

Arabidopsis Description

3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFS3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.