Factsheet for Solyc11g006270.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002570	Potato	endoplasmic reticulum, plasma membrane	95.11	95.11
VIT_13s0067g01830.t01	Wine grape	plastid	52.26	62.05
KRH70288	Soybean	mitochondrion	57.89	57.89
KRH70289	Soybean	endoplasmic reticulum, plasma membrane	56.77	56.77
Solyc11g006290.1.1	Tomato	plasma membrane	53.76	54.37
VIT_13s0067g01730.t01	Wine grape	extracellular, vacuole	37.59	54.05
AT5G16010.1	Thale cress	plasma membrane	53.38	52.99
Solyc11g006300.1.1	Tomato	endoplasmic reticulum	51.88	50.74
CDY26484	Canola	plastid	50.38	49.26
Bra006336.1-P	Field mustard	plastid	50.0	49.08
CDX78668	Canola	plastid	50.0	49.08
Bra008657.1-P	Field mustard	plastid	50.0	48.54
CDX69482	Canola	plastid	49.62	48.35
CDX70668	Canola	plasma membrane	48.87	47.97
CDX85520	Canola	plasma membrane, plastid	49.62	47.83
Bra023548.1-P	Field mustard	plastid	48.87	47.45
TraesCS2A01G113600.1	Wheat	endoplasmic reticulum, vacuole	48.5	47.43
HORVU1Hr1G013970.1	Barley	endoplasmic reticulum	49.25	47.29
Zm00001d018846_P001	Maize	peroxisome, plastid, vacuole	44.36	46.64
TraesCS2D01G249800.1	Wheat	plastid	42.11	44.8
CDY38137	Canola	endoplasmic reticulum, nucleus, plasma membrane, plastid	46.99	44.33
Zm00001d018847_P001	Maize	endoplasmic reticulum, vacuole	45.49	43.84
EER98015	Sorghum	endoplasmic reticulum, plasma membrane	46.24	43.01
Os07t0162100-00	Rice	endoplasmic reticulum	44.74	42.96
Zm00001d007910_P001	Maize	plasma membrane	45.49	42.76
TraesCS2D01G114200.1	Wheat	plastid	48.5	40.06
TraesCS2B01G269300.1	Wheat	mitochondrion	40.98	37.72
Solyc10g086500.1.1	Tomato	extracellular, plasma membrane	21.43	22.18
Solyc09g013070.2.1	Tomato	endoplasmic reticulum, extracellular	8.27	16.79

Protein Annotations

InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:50.1.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0016627	GO:GO:0055114	InterPro:IPR001104	UniProt:K4D4P0
PFAM:PF02544	PFscan:PS50244	PANTHER:PTHR10556	PANTHER:PTHR10556:SF35	EnsemblPlantsGene:Solyc11g006270.1	EnsemblPlants:Solyc11g006270.1.1
TMHMM:TMhelix	UniParc:UPI0002769DBF	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:-:1009775..1012021

Molecular Weight (calculated)

29734.8 Da

IEP (calculated)

9.527

GRAVY (calculated)

0.615

Length

266 amino acids

Sequence
(BLAST)

001: MFQSFVFVEE SSIITAITVI TFLFLAYLGV SEIAGKHLQY SKFWNVNANS GSSSSNFLQG KMSSKLGMFI LYAPACFMGF ASFFMYPDGG TRFMLLQSAV
101: TIHFFKRVLE VLFVHNYSGG MILGSVLLIS SSYFMVAAAM ICIQHLSLQY TEPEIDLKSI GVLIFLVGII GNFYHHYLLS KLRGSKEKGY KIPQGGLFSM
201: VICPHYLFEI LGFVGISFIS QTSFSFGCAV GVALYLSARS NVTRKWYLSK FENFPKNVKA LVPFVF

Best Arabidopsis Sequence Match ( AT5G16010.1 )
(BLAST)

001: MEMVTSFVYP PPPSILLNCM SVVGVAALAN IGWSEIRGNH LKYSKFGVSS SSPQPQKERF GSISSRNGML LLYTPAFLAA ASSFFVVPSD DLRFLLLKSA
101: LALHFFKRVF EVLFIHKYSG GMAIDSALTI SSSYFSSTAL MLYSQNLTLG LTEPSFDMKL AGVVMFVVGI VGNLYHHVLL AKLRKEDGKK EYKIPKGGLF
201: DIIICPHYLF EILVFWSFFL ISQTIYSFSF AMGTMLYLIG RSYATRTWYL SKFDDFPKHI KALIPFVF

Arabidopsis Description

3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFS3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.