CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
extracellular 4
golgi 4
plasma membrane 5
endoplasmic reticulum 5
vacuole 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	peroxisome, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70289	Soybean	endoplasmic reticulum, plasma membrane	80.45	80.45
VIT_13s0067g01830.t01	Wine grape	plastid	53.38	63.39
GSMUA_Achr2P12820_001	Banana	peroxisome, plasma membrane, plastid	59.77	60.0
PGSC0003DMT400002570	Potato	endoplasmic reticulum, plasma membrane	58.65	58.65
GSMUA_Achr5P02670_001	Banana	endoplasmic reticulum	57.89	58.56
Solyc11g006270.1.1	Tomato	plastid	57.89	57.89
AT5G16010.1	Thale cress	plasma membrane	58.27	57.84
CDY26484	Canola	plastid	58.27	56.99
Bra008657.1-P	Field mustard	plastid	58.65	56.93
CDX69482	Canola	plastid	58.27	56.78
PGSC0003DMT400002569	Potato	extracellular, peroxisome, plasma membrane	51.13	56.67
CDX85520	Canola	plasma membrane, plastid	58.65	56.52
VIT_13s0067g01730.t01	Wine grape	extracellular, vacuole	39.1	56.22
CDX70668	Canola	plasma membrane	57.14	56.09
CDX78668	Canola	plastid	57.14	56.09
Bra006336.1-P	Field mustard	plastid	57.14	56.09
Bra023548.1-P	Field mustard	plastid	57.52	55.84
Solyc11g006290.1.1	Tomato	plasma membrane	52.63	53.23
TraesCS2A01G113600.1	Wheat	endoplasmic reticulum, vacuole	52.63	51.47
HORVU1Hr1G013970.1	Barley	endoplasmic reticulum	52.63	50.54
CDY38137	Canola	endoplasmic reticulum, nucleus, plasma membrane, plastid	53.38	50.35
TraesCS2D01G249800.1	Wheat	plastid	46.62	49.6
Zm00001d018846_P001	Maize	peroxisome, plastid, vacuole	46.24	48.62
Os07t0162100-00	Rice	endoplasmic reticulum	48.12	46.21
EER98015	Sorghum	endoplasmic reticulum, plasma membrane	48.12	44.76
Zm00001d018847_P001	Maize	endoplasmic reticulum, vacuole	46.24	44.57
TraesCS2D01G114200.1	Wheat	plastid	53.01	43.79
TraesCS2B01G269300.1	Wheat	mitochondrion	44.74	41.18
Zm00001d007910_P001	Maize	plasma membrane	43.23	40.64
KRH49269	Soybean	endoplasmic reticulum, plasma membrane	22.93	23.19
KRH27711	Soybean	endoplasmic reticulum, plasma membrane	22.56	22.81

Protein Annotations

EntrezGene:100797930	InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:50.1.3	EMBL:ACUP02000762	EMBL:BT094801	UniProt:C6TBA0
EnsemblPlantsGene:GLYMA_02G081100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0016627	GO:GO:0055114	InterPro:IPR001104	EnsemblPlants:KRH70288	ProteinID:KRH70288
ProteinID:KRH70288.1	PFAM:PF02544	PFscan:PS50244	PANTHER:PTHR10556	PANTHER:PTHR10556:SF35	TMHMM:TMhelix
UniParc:UPI0001B15A7E	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:7009105..7010829

Molecular Weight (calculated)

30440.6 Da

IEP (calculated)

10.103

GRAVY (calculated)

0.464

Length

266 amino acids

Sequence
(BLAST)

001: MVIKSVLFSF IFPPPPSLVV WGLTVTSFLI LANAFLSEIR GKHLNYSKFW NANPSAEKQV KLSSKAGMLL LYTPAFLAGL ASFWVFPHQG LRFTILQSAV
101: TLHYFKRVFE VLFIHKYSGG MTLESAIPIT LSYFLSAVTM VYSQHLTKGF PEPPINLFYP GIVLFLVGII GNFYHHYLLS KLRGKGEKEY KIPKGGFFEL
201: VICPHYFFEI TVFYGIFFIS QTLYSFAFAV GTTMYLVGRS YSTRKWYLSK FEDFPKHVKA VIPFVF

Best Arabidopsis Sequence Match ( AT5G16010.1 )
(BLAST)

001: MEMVTSFVYP PPPSILLNCM SVVGVAALAN IGWSEIRGNH LKYSKFGVSS SSPQPQKERF GSISSRNGML LLYTPAFLAA ASSFFVVPSD DLRFLLLKSA
101: LALHFFKRVF EVLFIHKYSG GMAIDSALTI SSSYFSSTAL MLYSQNLTLG LTEPSFDMKL AGVVMFVVGI VGNLYHHVLL AKLRKEDGKK EYKIPKGGLF
201: DIIICPHYLF EILVFWSFFL ISQTIYSFSF AMGTMLYLIG RSYATRTWYL SKFDDFPKHI KALIPFVF

Arabidopsis Description

3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFS3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.