Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 4
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26484 | Canola | plastid | 86.57 | 85.29 |
| Bra008657.1-P | Field mustard | plastid | 85.82 | 83.94 |
| CDX69482 | Canola | plastid | 85.45 | 83.88 |
| CDX78668 | Canola | plastid | 83.96 | 83.03 |
| Bra006336.1-P | Field mustard | plastid | 83.58 | 82.66 |
| CDX70668 | Canola | plasma membrane | 83.21 | 82.29 |
| Bra023548.1-P | Field mustard | plastid | 76.49 | 74.82 |
| CDX85520 | Canola | plasma membrane, plastid | 75.75 | 73.55 |
| CDY38137 | Canola | endoplasmic reticulum, nucleus, plasma membrane, plastid | 71.27 | 67.73 |
| KRH70289 | Soybean | endoplasmic reticulum, plasma membrane | 59.7 | 60.15 |
| GSMUA_Achr5P02670_001 | Banana | endoplasmic reticulum | 57.46 | 58.56 |
| KRH70288 | Soybean | mitochondrion | 57.84 | 58.27 |
| VIT_19s0014g00080.t01 | Wine grape | plastid | 52.61 | 58.26 |
| GSMUA_Achr2P12820_001 | Banana | peroxisome, plasma membrane, plastid | 57.46 | 58.11 |
| Solyc11g006300.1.1 | Tomato | endoplasmic reticulum | 56.72 | 55.88 |
| PGSC0003DMT400002567 | Potato | endoplasmic reticulum, extracellular | 56.72 | 55.68 |
| PGSC0003DMT400002570 | Potato | endoplasmic reticulum, plasma membrane | 54.48 | 54.89 |
| Solyc11g006270.1.1 | Tomato | plastid | 52.99 | 53.38 |
| HORVU1Hr1G013970.1 | Barley | endoplasmic reticulum | 54.1 | 52.35 |
| PGSC0003DMT400002569 | Potato | extracellular, peroxisome, plasma membrane | 46.64 | 52.08 |
| TraesCS2A01G113600.1 | Wheat | endoplasmic reticulum, vacuole | 52.61 | 51.84 |
| Zm00001d018846_P001 | Maize | peroxisome, plastid, vacuole | 48.88 | 51.78 |
| TraesCS2D01G249800.1 | Wheat | plastid | 47.76 | 51.2 |
| Solyc11g006290.1.1 | Tomato | plasma membrane | 48.13 | 49.05 |
| EER98015 | Sorghum | endoplasmic reticulum, plasma membrane | 51.49 | 48.25 |
| Os07t0162100-00 | Rice | endoplasmic reticulum | 48.88 | 47.29 |
| Zm00001d018847_P001 | Maize | endoplasmic reticulum, vacuole | 47.39 | 46.01 |
| TraesCS2D01G114200.1 | Wheat | plastid | 52.24 | 43.48 |
| Zm00001d007910_P001 | Maize | plasma membrane | 45.15 | 42.76 |
| TraesCS2B01G269300.1 | Wheat | mitochondrion | 45.15 | 41.87 |
| AT2G38050.1 | Thale cress | endoplasmic reticulum | 17.91 | 18.32 |
Protein Annotations
| InterPro:3-oxo-5_a-steroid_4-DH_C | MapMan:50.1.3 | EntrezGene:831458 | ProteinID:AED92234.1 | EMBL:AF380656 | ArrayExpress:AT5G16010 |
| EnsemblPlantsGene:AT5G16010 | RefSeq:AT5G16010 | TAIR:AT5G16010 | RefSeq:AT5G16010-TAIR-G | EnsemblPlants:AT5G16010.1 | TAIR:AT5G16010.1 |
| EMBL:BT001130 | ProteinID:CAC01800.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009941 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0016627 |
| GO:GO:0055114 | InterPro:IPR001104 | RefSeq:NP_197105.1 | PFAM:PF02544 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50244 | PANTHER:PTHR10556 | PANTHER:PTHR10556:SF35 | UniProt:Q9LFS3 | TMHMM:TMhelix |
| UniParc:UPI0000048B4C | SEG:seg | : | : | : | : |
Description
3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFS3]
Coordinates
chr5:+:5227747..5229117
Molecular Weight (calculated)
30128.2 Da
IEP (calculated)
9.733
GRAVY (calculated)
0.446
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMVTSFVYP PPPSILLNCM SVVGVAALAN IGWSEIRGNH LKYSKFGVSS SSPQPQKERF GSISSRNGML LLYTPAFLAA ASSFFVVPSD DLRFLLLKSA
101: LALHFFKRVF EVLFIHKYSG GMAIDSALTI SSSYFSSTAL MLYSQNLTLG LTEPSFDMKL AGVVMFVVGI VGNLYHHVLL AKLRKEDGKK EYKIPKGGLF
201: DIIICPHYLF EILVFWSFFL ISQTIYSFSF AMGTMLYLIG RSYATRTWYL SKFDDFPKHI KALIPFVF
101: LALHFFKRVF EVLFIHKYSG GMAIDSALTI SSSYFSSTAL MLYSQNLTLG LTEPSFDMKL AGVVMFVVGI VGNLYHHVLL AKLRKEDGKK EYKIPKGGLF
201: DIIICPHYLF EILVFWSFFL ISQTIYSFSF AMGTMLYLIG RSYATRTWYL SKFDDFPKHI KALIPFVF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.