CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, nucleus, plasma membrane

Predictor Summary:

nucleus 2
plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85520	Canola	plasma membrane, plastid	80.85	82.61
CDX70668	Canola	plasma membrane	71.28	74.17
CDX78668	Canola	plastid	69.86	72.69
CDY26484	Canola	plastid	68.79	71.32
AT5G16010.1	Thale cress	plasma membrane	67.73	71.27
CDX69482	Canola	plastid	68.44	70.7
VIT_19s0014g00080.t01	Wine grape	plastid	49.29	57.44
GSMUA_Achr5P02670_001	Banana	endoplasmic reticulum	51.06	54.75
GSMUA_Achr2P12820_001	Banana	peroxisome, plasma membrane, plastid	50.71	53.96
KRH70289	Soybean	endoplasmic reticulum, plasma membrane	50.35	53.38
KRH70288	Soybean	mitochondrion	50.35	53.38
HORVU1Hr1G013970.1	Barley	endoplasmic reticulum	50.71	51.62
PGSC0003DMT400002567	Potato	endoplasmic reticulum, extracellular	49.29	50.92
PGSC0003DMT400002569	Potato	extracellular, peroxisome, plasma membrane	43.26	50.83
Solyc11g006300.1.1	Tomato	endoplasmic reticulum	48.94	50.74
TraesCS2A01G113600.1	Wheat	endoplasmic reticulum, vacuole	48.58	50.37
Zm00001d018846_P001	Maize	peroxisome, plastid, vacuole	45.04	50.2
TraesCS2D01G249800.1	Wheat	plastid	43.97	49.6
Solyc11g006290.1.1	Tomato	plasma membrane	45.74	49.05
PGSC0003DMT400002570	Potato	endoplasmic reticulum, plasma membrane	45.74	48.5
EER98015	Sorghum	endoplasmic reticulum, plasma membrane	48.58	47.9
Solyc11g006270.1.1	Tomato	plastid	44.33	46.99
Os07t0162100-00	Rice	endoplasmic reticulum	46.1	46.93
Zm00001d018847_P001	Maize	endoplasmic reticulum, vacuole	43.97	44.93
TraesCS2D01G114200.1	Wheat	plastid	49.29	43.17
TraesCS2B01G269300.1	Wheat	mitochondrion	42.91	41.87
Zm00001d007910_P001	Maize	plasma membrane	41.49	41.34
CDY18409	Canola	cytosol, endoplasmic reticulum, plasma membrane	21.63	23.28
CDX93333	Canola	cytosol, endoplasmic reticulum, plasma membrane	21.28	22.99

Protein Annotations

InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:50.1.3	GO:A0A078HJU9	UniProt:A0A078HJU9	EnsemblPlants:CDY38137	ProteinID:CDY38137
ProteinID:CDY38137.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016627	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00065424001	InterPro:IPR001104	PFAM:PF02544	PFscan:PS50244
PANTHER:PTHR10556	PANTHER:PTHR10556:SF35	TMHMM:TMhelix	UniParc:UPI0004EE1A2D	SEG:seg	:

Description

BnaC02g06360DBnaC02g06360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJU9]

Coordinates

chrLK032416:-:335163..336196

Molecular Weight (calculated)

31567.7 Da

IEP (calculated)

9.974

GRAVY (calculated)

0.228

Length

282 amino acids

Sequence
(BLAST)

001: MEDNWRGQQS SMEMATSFLY PPPPSVLLNT MTVVGLAALP VIGLSEVRGN NLKYSKFNNN NASSSSQKQR FGSISSRTGM LCLYTPAFLA ASASFVLSPS
101: QNLRFLLLKS ALSIHFFKRI FEVLFIHKYS GEMASDAAFT ISSGYFSSAA LVLYSQSFAL GLPDPGLDLK FYGILMFVVG IVGNMYHHVL LAKLRKEGDG
201: GGKKEYKIPK GGLFGEVICP HYMFEILVFW GFFMISQTIY SLSLAMSTTF YLMGRSYATR RWYLSKFDDF PKRIKALIPF VF

Best Arabidopsis Sequence Match ( AT5G16010.1 )
(BLAST)

001: MEMVTSFVYP PPPSILLNCM SVVGVAALAN IGWSEIRGNH LKYSKFGVSS SSPQPQKERF GSISSRNGML LLYTPAFLAA ASSFFVVPSD DLRFLLLKSA
101: LALHFFKRVF EVLFIHKYSG GMAIDSALTI SSSYFSSTAL MLYSQNLTLG LTEPSFDMKL AGVVMFVVGI VGNLYHHVLL AKLRKEDGKK EYKIPKGGLF
201: DIIICPHYLF EILVFWSFFL ISQTIYSFSF AMGTMLYLIG RSYATRTWYL SKFDDFPKHI KALIPFVF

Arabidopsis Description

3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFS3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.