Factsheet for VIT_19s0014g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
peroxisome 2
vacuole 2
plasma membrane 3
golgi 2
extracellular 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	golgi, peroxisome, plasma membrane, plastid, vacuole
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g01830.t01	Wine grape	plastid	58.26	62.95
Zm00001d018846_P001	Maize	peroxisome, plastid, vacuole	59.92	57.31
VIT_13s0067g01730.t01	Wine grape	extracellular, vacuole	43.39	56.76
HORVU1Hr1G013970.1	Barley	endoplasmic reticulum	61.57	53.79
TraesCS2A01G113600.1	Wheat	endoplasmic reticulum, vacuole	60.33	53.68
AT5G16010.1	Thale cress	plasma membrane	58.26	52.61
TraesCS2D01G249800.1	Wheat	plastid	53.72	52.0
CDY26484	Canola	plastid	57.85	51.47
CDX85520	Canola	plasma membrane, plastid	58.26	51.09
Bra006336.1-P	Field mustard	plastid	57.02	50.92
Bra023548.1-P	Field mustard	plastid	57.44	50.73
CDX78668	Canola	plastid	56.61	50.55
CDX70668	Canola	plasma membrane	56.61	50.55
Bra008657.1-P	Field mustard	plastid	57.02	50.37
CDX69482	Canola	plastid	56.61	50.18
EER98015	Sorghum	endoplasmic reticulum, plasma membrane	59.09	50.0
Os07t0162100-00	Rice	endoplasmic reticulum	57.02	49.82
CDY38137	Canola	endoplasmic reticulum, nucleus, plasma membrane, plastid	57.44	49.29
Zm00001d018847_P001	Maize	endoplasmic reticulum, vacuole	55.79	48.91
TraesCS2D01G114200.1	Wheat	plastid	59.92	45.03
TraesCS2B01G269300.1	Wheat	mitochondrion	52.07	43.6
Zm00001d007910_P001	Maize	plasma membrane	46.28	39.58
VIT_08s0007g01760.t01	Wine grape	endoplasmic reticulum	21.49	20.23

Protein Annotations

EntrezGene:100252124	wikigene:100252124	InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:50.1.3	ProteinID:CCB46182	ProteinID:CCB46182.1
UniProt:F6H2J5	EMBL:FN595229	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016627
GO:GO:0055114	InterPro:IPR001104	EntrezGene:LOC100252124	wikigene:LOC100252124	PFAM:PF02544	PFscan:PS50244
PANTHER:PTHR10556	PANTHER:PTHR10556:SF35	TMHMM:TMhelix	UniParc:UPI00021086DE	ArrayExpress:VIT_19s0014g00080	EnsemblPlantsGene:VIT_19s0014g00080
EnsemblPlants:VIT_19s0014g00080.t01	unigene:Vvi.22472	RefSeq:XP_002285664	RefSeq:XP_002285664.1	:	:

Description

No Description!

Coordinates

chr19:+:74024..75062

Molecular Weight (calculated)

27421.8 Da

IEP (calculated)

9.783

GRAVY (calculated)

0.327

Length

242 amino acids

Sequence
(BLAST)

001: MSVVSFASMA NAGLSELKGK HMEYSKFWEL KSGRKYKVDS RTGMIVCYTP AFLAGVASFA LFPDESFRFL LLTSALSIHF FKRIFEVLFV HKYSGGMALD
101: AAIVISLSYF ISTATMIYAQ HLSRDFPEPL MDLKYPGMAL FLVGILGNLY HHCQLSKLRS KGEREYKIPK GGLFNLVVCP HYLFEILGFI GFSFISQTVY
201: AFALATGTAL YLMGRSYSTR RWYVSKFENF PNNVKALIPY IL

Best Arabidopsis Sequence Match ( AT5G16010.1 )
(BLAST)

001: MEMVTSFVYP PPPSILLNCM SVVGVAALAN IGWSEIRGNH LKYSKFGVSS SSPQPQKERF GSISSRNGML LLYTPAFLAA ASSFFVVPSD DLRFLLLKSA
101: LALHFFKRVF EVLFIHKYSG GMAIDSALTI SSSYFSSTAL MLYSQNLTLG LTEPSFDMKL AGVVMFVVGI VGNLYHHVLL AKLRKEDGKK EYKIPKGGLF
201: DIIICPHYLF EILVFWSFFL ISQTIYSFSF AMGTMLYLIG RSYATRTWYL SKFDDFPKHI KALIPFVF

Arabidopsis Description

3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFS3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.