CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006336.1-P	Field mustard	plastid	99.63	99.63
CDX70668	Canola	plasma membrane	95.57	95.57
CDX69482	Canola	plastid	85.61	84.98
CDY26484	Canola	plastid	85.24	84.93
AT5G16010.1	Thale cress	plasma membrane	83.03	83.96
CDX85520	Canola	plasma membrane, plastid	76.38	75.0
CDY38137	Canola	endoplasmic reticulum, nucleus, plasma membrane, plastid	72.69	69.86
KRH70289	Soybean	endoplasmic reticulum, plasma membrane	57.93	59.02
GSMUA_Achr5P02670_001	Banana	endoplasmic reticulum	57.2	58.94
GSMUA_Achr2P12820_001	Banana	peroxisome, plasma membrane, plastid	57.56	58.87
KRH70288	Soybean	mitochondrion	56.09	57.14
VIT_19s0014g00080.t01	Wine grape	plastid	50.55	56.61
Solyc11g006300.1.1	Tomato	endoplasmic reticulum	52.77	52.57
PGSC0003DMT400002567	Potato	endoplasmic reticulum, extracellular	52.03	51.65
HORVU1Hr1G013970.1	Barley	endoplasmic reticulum	52.77	51.62
PGSC0003DMT400002570	Potato	endoplasmic reticulum, plasma membrane	50.18	51.13
PGSC0003DMT400002569	Potato	extracellular, peroxisome, plasma membrane	45.02	50.83
TraesCS2A01G113600.1	Wheat	endoplasmic reticulum, vacuole	50.55	50.37
Solyc11g006270.1.1	Tomato	plastid	49.08	50.0
Zm00001d018846_P001	Maize	peroxisome, plastid, vacuole	46.49	49.8
TraesCS2D01G249800.1	Wheat	plastid	45.02	48.8
Solyc11g006290.1.1	Tomato	plasma membrane	46.13	47.53
Os07t0162100-00	Rice	endoplasmic reticulum	47.6	46.57
Zm00001d018847_P001	Maize	endoplasmic reticulum, vacuole	47.23	46.38
EER98015	Sorghum	endoplasmic reticulum, plasma membrane	48.71	46.15
Zm00001d007910_P001	Maize	plasma membrane	45.76	43.82
TraesCS2D01G114200.1	Wheat	plastid	50.92	42.86
TraesCS2B01G269300.1	Wheat	mitochondrion	43.54	40.83
CDY18409	Canola	cytosol, endoplasmic reticulum, plasma membrane	21.77	22.52
CDX93333	Canola	cytosol, endoplasmic reticulum, plasma membrane	21.4	22.22

Protein Annotations

InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:50.1.3	GO:A0A078CU74	EnsemblPlants:CDX78668	ProteinID:CDX78668	ProteinID:CDX78668.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016627
EnsemblPlantsGene:GSBRNA2T00130092001	InterPro:IPR001104	PFAM:PF02544	PFscan:PS50244	PANTHER:PTHR10556	PANTHER:PTHR10556:SF35
TMHMM:TMhelix	UniParc:UPI0004EE7D3B	SEG:seg	:	:	:

Description

BnaA03g05800D

Coordinates

chrLK031815:+:1746238..1747273

Molecular Weight (calculated)

30559.6 Da

IEP (calculated)

10.020

GRAVY (calculated)

0.437

Length

271 amino acids

Sequence
(BLAST)

001: MDMATSFVYP PPPSMLLNTM SVVGLAALAQ IGWSEVRGNH LKYSKFASSS SSASPQPQKH RFGSFSSRIG MLLLYTPAFL AAAASFFVLP SDDLRFLLLK
101: SALALHFLKR IFEVMFIHKY SGEMAVDSAF LITSSYFSST VLMLYSQSFA LGLTEPHFDL KLLGVVMFVV GIVGNLYHHV LLAKLRNEEG GKKVYKIPKG
201: GLFNTVICPH YLFEIIVFWS FFMVSQTIYS FSFAMGTTFY LIGRSYATRR WYLSKFDDFP KHVKALIPFV F

Best Arabidopsis Sequence Match ( AT5G16010.1 )
(BLAST)

001: MEMVTSFVYP PPPSILLNCM SVVGVAALAN IGWSEIRGNH LKYSKFGVSS SSPQPQKERF GSISSRNGML LLYTPAFLAA ASSFFVVPSD DLRFLLLKSA
101: LALHFFKRVF EVLFIHKYSG GMAIDSALTI SSSYFSSTAL MLYSQNLTLG LTEPSFDMKL AGVVMFVVGI VGNLYHHVLL AKLRKEDGKK EYKIPKGGLF
201: DIIICPHYLF EILVFWSFFL ISQTIYSFSF AMGTMLYLIG RSYATRTWYL SKFDDFPKHI KALIPFVF

Arabidopsis Description

3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFS3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.