Factsheet for Solyc11g006300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
mitochondrion 1
peroxisome 1
plasma membrane 4
extracellular 3
endoplasmic reticulum 4
vacuole 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002567	Potato	endoplasmic reticulum, extracellular	91.54	91.21
GSMUA_Achr5P02670_001	Banana	endoplasmic reticulum	56.62	58.56
AT5G16010.1	Thale cress	plasma membrane	55.88	56.72
CDY26484	Canola	plastid	55.15	55.15
GSMUA_Achr2P12820_001	Banana	peroxisome, plasma membrane, plastid	53.68	55.09
Solyc11g006290.1.1	Tomato	plasma membrane	52.94	54.75
Bra008657.1-P	Field mustard	plastid	54.41	54.01
CDX69482	Canola	plastid	54.04	53.85
CDX70668	Canola	plasma membrane	53.31	53.51
Bra006336.1-P	Field mustard	plastid	52.94	53.14
CDX78668	Canola	plastid	52.57	52.77
Solyc11g006270.1.1	Tomato	plastid	50.74	51.88
Bra023548.1-P	Field mustard	plastid	51.47	51.09
TraesCS2A01G113600.1	Wheat	endoplasmic reticulum, vacuole	50.74	50.74
CDX85520	Canola	plasma membrane, plastid	51.47	50.72
HORVU1Hr1G013970.1	Barley	endoplasmic reticulum	51.1	50.18
Zm00001d018846_P001	Maize	peroxisome, plastid, vacuole	45.96	49.41
CDY38137	Canola	endoplasmic reticulum, nucleus, plasma membrane, plastid	50.74	48.94
EER98015	Sorghum	endoplasmic reticulum, plasma membrane	51.1	48.6
TraesCS2D01G249800.1	Wheat	plastid	44.12	48.0
Os07t0162100-00	Rice	endoplasmic reticulum	47.43	46.57
Zm00001d018847_P001	Maize	endoplasmic reticulum, vacuole	46.32	45.65
TraesCS2D01G114200.1	Wheat	plastid	51.1	43.17
TraesCS2B01G269300.1	Wheat	mitochondrion	43.01	40.48
Zm00001d007910_P001	Maize	plasma membrane	40.07	38.52
Solyc09g013070.2.1	Tomato	endoplasmic reticulum, extracellular	9.93	20.61
Solyc10g086500.1.1	Tomato	extracellular, plasma membrane	19.12	20.23

Protein Annotations

InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:50.1.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0016627	GO:GO:0055114	InterPro:IPR001104	UniProt:K4D4P3
PFAM:PF02544	PFscan:PS50244	PANTHER:PTHR10556	PANTHER:PTHR10556:SF35	EnsemblPlantsGene:Solyc11g006300.1	EnsemblPlants:Solyc11g006300.1.1
TMHMM:TMhelix	UniParc:UPI0002769DC2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:-:1024921..1026890

Molecular Weight (calculated)

31004.3 Da

IEP (calculated)

9.534

GRAVY (calculated)

0.267

Length

272 amino acids

Sequence
(BLAST)

001: MVMSTLWKFL YPPPPSLFVT TMSIISVVSL ANAGFSEIKG KHMQYSKFFG TIKDENDEKK KKKKKAKIES KLGMILLYGP SFLGGISSFA IFPNGDLRFV
101: LVCSALSIHF FKRLFEVLFV HKYSGSMDVE DAIAISLSYF LSTITMIYCQ HLSQDLLEPS IDLKYGGYII FLVGIIGNFY HHILLSKLRT KGEKEYKIPQ
201: GGLFDFAICP HYLFEILIFV GISCTSQTLY AISFTLGTTF YLMGRSTATR RWYQSKFDDF PKDIKALIPY IF

Best Arabidopsis Sequence Match ( AT5G16010.1 )
(BLAST)

001: MEMVTSFVYP PPPSILLNCM SVVGVAALAN IGWSEIRGNH LKYSKFGVSS SSPQPQKERF GSISSRNGML LLYTPAFLAA ASSFFVVPSD DLRFLLLKSA
101: LALHFFKRVF EVLFIHKYSG GMAIDSALTI SSSYFSSTAL MLYSQNLTLG LTEPSFDMKL AGVVMFVVGI VGNLYHHVLL AKLRKEDGKK EYKIPKGGLF
201: DIIICPHYLF EILVFWSFFL ISQTIYSFSF AMGTMLYLIG RSYATRTWYL SKFDDFPKHI KALIPFVF

Arabidopsis Description

3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFS3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.