CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, endoplasmic reticulum

Predictor Summary:

plastid 1
endoplasmic reticulum 2
extracellular 1
golgi 1
plasma membrane 2
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	endoplasmic reticulum, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18409	Canola	cytosol, endoplasmic reticulum, plasma membrane	95.79	95.42
AT2G38050.1	Thale cress	endoplasmic reticulum	84.29	83.97
PGSC0003DMT400052432	Potato	endoplasmic reticulum, plasma membrane	62.84	63.32
VIT_08s0007g01760.t01	Wine grape	endoplasmic reticulum	62.07	63.03
KRH49269	Soybean	endoplasmic reticulum, plasma membrane	62.45	61.98
Solyc09g013070.2.1	Tomato	endoplasmic reticulum, extracellular	31.03	61.83
KRH27711	Soybean	endoplasmic reticulum, plasma membrane	62.07	61.6
PGSC0003DMT400049423	Potato	endoplasmic reticulum, plastid	52.11	56.9
Solyc10g086500.1.1	Tomato	extracellular, plasma membrane	54.79	55.64
GSMUA_Achr4P11670_001	Banana	plasma membrane	56.7	55.64
OQU87873	Sorghum	plasma membrane	47.51	46.97
Zm00001d042843_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	46.74	46.56
TraesCS3D01G359100.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	45.59	44.74
Os11t0184100-01	Rice	endoplasmic reticulum, plasma membrane, plastid	46.36	44.49
TraesCS3A01G366000.1	Wheat	plasma membrane	45.98	44.44
TraesCS3B01G397800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	45.59	44.24
Os01t0851600-01	Rice	endoplasmic reticulum, golgi	45.21	44.03
HORVU3Hr1G085400.1	Barley	plasma membrane	45.59	43.91
CDX70668	Canola	plasma membrane	22.99	22.14
CDX78668	Canola	plastid	22.22	21.4
CDX85520	Canola	plasma membrane, plastid	22.61	21.38
CDY38137	Canola	endoplasmic reticulum, nucleus, plasma membrane, plastid	22.99	21.28
CDX69482	Canola	plastid	22.22	21.25
CDY26484	Canola	plastid	21.84	20.96

Protein Annotations

KEGG:00140+1.3.1.22	KEGG:00905+1.3.1.22	MapMan:11.3.1.3	InterPro:3-oxo-5-alpha-steroid_4-DH	InterPro:3-oxo-5_a-steroid_4-DH_C	GO:A0A078E167
EnsemblPlants:CDX93333	ProteinID:CDX93333	ProteinID:CDX93333.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003865
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008202	GO:GO:0016020	GO:GO:0016021	GO:GO:0016627	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00155310001	InterPro:IPR001104	PFAM:PF02544	PIRSF:PIRSF015596	PFscan:PS50244	PANTHER:PTHR10556
PANTHER:PTHR10556:SF37	MetaCyc:PWY-6032	MetaCyc:PWY-7455	TMHMM:TMhelix	UniParc:UPI0004EB7F96	SEG:seg

Description

BnaC04g45630D

Coordinates

chrLK031875:+:1136667..1137676

Molecular Weight (calculated)

30249.8 Da

IEP (calculated)

10.021

GRAVY (calculated)

0.120

Length

261 amino acids

Sequence
(BLAST)

001: MKEIADETFF RYCVLTLIFS GPPTAVALKF LQAPYGKHNR SGWGPTLSPP LAWFLMESPT LWLTLLLFPF GRHSHNPKSL LLFSPYLLHY FHRTVIYPLR
101: LLRSSSSSKN GFPITIAAMA FTFNLLNAYI QARYVSHYKN DYDDGVWFWL RFVIGTVVFV TGMWINITSD RTLVRMKKEN RGGYVIPRGG LFEFVSCPNY
201: FGEVVEWLGW AVMTWSWAGV GFFLYTCSNL IPRARASHVW YGDKFKDEYP KTRKAVIPFV F

Best Arabidopsis Sequence Match ( AT2G38050.1 )
(BLAST)

001: MEEIADKTFF RYCLLTLIFA GPPTAVLLKF LQAPYGKHNR TGWGPTVSPP IAWFVMESPT LWLTLLLFPF GRHALNPKSL LLFSPYLIHY FHRTIIYPLR
101: LFRSSFPAGK NGFPITIAAL AFTFNLLNGY IQARWVSHYK DDYEDGNWFW WRFVIGMVVF ITGMYINITS DRTLVRLKKE NRGGYVIPRG GWFELVSCPN
201: YFGEAIEWLG WAVMTWSWAG IGFFLYTCSN LFPRARASHK WYIAKFKEEY PKTRKAVIPF VY

Arabidopsis Description

DET2Steroid 5-alpha-reductase DET2 [Source:UniProtKB/Swiss-Prot;Acc:Q38944]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.