Factsheet for HORVU3Hr1G085400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G397800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	89.67	90.33
TraesCS3D01G359100.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	88.19	89.85
TraesCS3A01G366000.1	Wheat	plasma membrane	87.45	87.78
OQU87873	Sorghum	plasma membrane	71.96	73.86
Os01t0851600-01	Rice	endoplasmic reticulum, golgi	72.32	73.13
Zm00001d042843_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	70.11	72.52
Os11t0184100-01	Rice	endoplasmic reticulum, plasma membrane, plastid	67.16	66.91
GSMUA_Achr4P11670_001	Banana	plasma membrane	49.08	50.0
KRH27711	Soybean	endoplasmic reticulum, plasma membrane	47.6	49.05
Bra017142.1-P	Field mustard	endoplasmic reticulum, plastid	36.9	48.54
KRH49269	Soybean	endoplasmic reticulum, plasma membrane	46.86	48.29
VIT_08s0007g01760.t01	Wine grape	endoplasmic reticulum	45.76	48.25
PGSC0003DMT400052432	Potato	endoplasmic reticulum, plasma membrane	45.39	47.49
CDY18409	Canola	cytosol, endoplasmic reticulum, plasma membrane	44.65	46.18
AT2G38050.1	Thale cress	endoplasmic reticulum	44.28	45.8
PGSC0003DMT400049423	Potato	endoplasmic reticulum, plastid	40.22	45.61
CDX93333	Canola	cytosol, endoplasmic reticulum, plasma membrane	43.91	45.59
Solyc09g013070.2.1	Tomato	endoplasmic reticulum, extracellular	21.03	43.51
Solyc10g086500.1.1	Tomato	extracellular, plasma membrane	40.96	43.19
HORVU1Hr1G013970.1	Barley	endoplasmic reticulum	23.25	22.74

Protein Annotations

KEGG:00140+1.3.1.22	KEGG:00905+1.3.1.22	MapMan:11.3.1.3	InterPro:3-oxo-5-alpha-steroid_4-DH	InterPro:3-oxo-5_a-steroid_4-DH_C	EMBL:AK357682
UniProt:F2D1C5	GO:GO:0003674	GO:GO:0003824	GO:GO:0003865	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008202
GO:GO:0009058	GO:GO:0009917	GO:GO:0010268	GO:GO:0016020	GO:GO:0016021	GO:GO:0016132
GO:GO:0016627	GO:GO:0050213	GO:GO:0055114	EnsemblPlantsGene:HORVU3Hr1G085400	EnsemblPlants:HORVU3Hr1G085400.1	InterPro:IPR001104
PFAM:PF02544	PIRSF:PIRSF015596	PFscan:PS50244	PANTHER:PTHR10556	PANTHER:PTHR10556:SF37	TMHMM:TMhelix
UniParc:UPI00020050FF	SEG:seg	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D1C5]

Coordinates

chrchr3H:-:612650834..612652320

Molecular Weight (calculated)

29398.3 Da

IEP (calculated)

9.835

GRAVY (calculated)

0.472

Length

271 amino acids

Sequence
(BLAST)

001: MPDQTAAAAG AGGDGALFSR CLLALYIISP VTVFLLRYVS APYGKLSRPG WGPAIPAALA WCAMESPTLW LPPLVAPLPL LLAAAASPLA ALPPALYALH
101: YVNRTVLHPL RILRLRRAPA PVPVLVAACA FGFNLLNAYV QARSWALHAA RPAPAPALAL ARCLAGLALF AWGMRVNVAA DRELLRLKEA GGGYKIPRGG
201: WFDAVTCPNY FGEIVEWLGY CLVAWSPAAW AFFLYTCANL MPRARDHRLW YLNKFGGEYP ASRRAVIPYI Y

Best Arabidopsis Sequence Match ( AT2G38050.1 )
(BLAST)

001: MEEIADKTFF RYCLLTLIFA GPPTAVLLKF LQAPYGKHNR TGWGPTVSPP IAWFVMESPT LWLTLLLFPF GRHALNPKSL LLFSPYLIHY FHRTIIYPLR
101: LFRSSFPAGK NGFPITIAAL AFTFNLLNGY IQARWVSHYK DDYEDGNWFW WRFVIGMVVF ITGMYINITS DRTLVRLKKE NRGGYVIPRG GWFELVSCPN
201: YFGEAIEWLG WAVMTWSWAG IGFFLYTCSN LFPRARASHK WYIAKFKEEY PKTRKAVIPF VY

Arabidopsis Description

DET2Steroid 5-alpha-reductase DET2 [Source:UniProtKB/Swiss-Prot;Acc:Q38944]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.