Factsheet for Bra017142.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 4
cytosol 1
peroxisome 2
golgi 3
plasma membrane 3
extracellular 2
endoplasmic reticulum 3
vacuole 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	golgi, peroxisome, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18409	Canola	cytosol, endoplasmic reticulum, plasma membrane	98.06	77.1
AT2G38050.1	Thale cress	endoplasmic reticulum	83.98	66.03
VIT_08s0007g01760.t01	Wine grape	endoplasmic reticulum	64.56	51.75
PGSC0003DMT400049423	Potato	endoplasmic reticulum, plastid	59.71	51.46
PGSC0003DMT400052432	Potato	endoplasmic reticulum, plasma membrane	64.56	51.35
KRH27711	Soybean	endoplasmic reticulum, plasma membrane	64.56	50.57
KRH49269	Soybean	endoplasmic reticulum, plasma membrane	64.56	50.57
Solyc10g086500.1.1	Tomato	extracellular, plasma membrane	59.71	47.86
GSMUA_Achr4P11670_001	Banana	plasma membrane	60.19	46.62
TraesCS3D01G359100.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	48.54	37.59
TraesCS3A01G366000.1	Wheat	plasma membrane	49.03	37.41
Solyc09g013070.2.1	Tomato	endoplasmic reticulum, extracellular	23.79	37.4
TraesCS3B01G397800.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	48.54	37.17
OQU87873	Sorghum	plasma membrane	47.57	37.12
Zm00001d042843_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	47.09	37.02
HORVU3Hr1G085400.1	Barley	plasma membrane	48.54	36.9
Os11t0184100-01	Rice	endoplasmic reticulum, plasma membrane, plastid	48.06	36.4
Os01t0851600-01	Rice	endoplasmic reticulum, golgi	47.09	36.19
Bra023548.1-P	Field mustard	plastid	26.21	19.71
Bra006336.1-P	Field mustard	plastid	25.24	19.19
Bra008657.1-P	Field mustard	plastid	25.24	18.98

Protein Annotations

MapMan:11.3.1.3	InterPro:3-oxo-5_a-steroid_4-DH_C	EnsemblPlantsGene:Bra017142	EnsemblPlants:Bra017142.1	EnsemblPlants:Bra017142.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009917	GO:GO:0010268	GO:GO:0016020
GO:GO:0016021	GO:GO:0016132	GO:GO:0016627	GO:GO:0050213	GO:GO:0055114	InterPro:IPR001104
UniProt:M4DKW1	PFAM:PF02544	PFscan:PS50244	PANTHER:PTHR10556	PANTHER:PTHR10556:SF37	TMHMM:TMhelix
UniParc:UPI00025447FE	SEG:seg	:	:	:	:

Description

AT2G38050 (E=1e-096) DET2, DWF6, ATDET2 | DET2 (DE-ETIOLATED 2); sterol 5-alpha reductase

Coordinates

chrA04:-:16353021..16353729

Molecular Weight (calculated)

24067.3 Da

IEP (calculated)

10.053

GRAVY (calculated)

0.131

Length

206 amino acids

Sequence
(BLAST)

001: MESPTLWLTL LLFPFGRHSH NPKSLLLFSP YLLHYFHRTV IYPLRLLRSS SSAKTGFPMS IAAMAFTFNL LNAYIQARYV SHYKNDYEDG VWFWLRFVIG
101: TVVFVTGMWI NITSDRTLVR LKKENRGGYV IPRGGLFEFV SCPNYFGEVV EWLGWAVMTW SWAGIGFFLY TCSNLIPRAR ASHVWYGDKF KDEYPKTRKA
201: VIPFVF

Best Arabidopsis Sequence Match ( AT2G38050.1 )
(BLAST)

001: MEEIADKTFF RYCLLTLIFA GPPTAVLLKF LQAPYGKHNR TGWGPTVSPP IAWFVMESPT LWLTLLLFPF GRHALNPKSL LLFSPYLIHY FHRTIIYPLR
101: LFRSSFPAGK NGFPITIAAL AFTFNLLNGY IQARWVSHYK DDYEDGNWFW WRFVIGMVVF ITGMYINITS DRTLVRLKKE NRGGYVIPRG GWFELVSCPN
201: YFGEAIEWLG WAVMTWSWAG IGFFLYTCSN LFPRARASHK WYIAKFKEEY PKTRKAVIPF VY

Arabidopsis Description

DET2Steroid 5-alpha-reductase DET2 [Source:UniProtKB/Swiss-Prot;Acc:Q38944]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.